Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04674

Metabolite ID
P04674
Deionized mass
178.0245 Da
Average m/z
179.0327
Average RT
8.2695
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
46
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

46 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)3.497e-13
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)3.31e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.414e-11
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 1Chr05:37029299–37037313 (+)8.84e-12
Glyma.05G182900 hypothetical protein NA 1Chr05:37056753–37057349 (-)8.84e-12
Glyma.05G183100 hypothetical protein AT5G64940:ATH13:ABC2 homolog 13 1Chr05:37059525–37070146 (-)8.84e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)9.777e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)1.102e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)5.974e-12
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)5.974e-12
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)5.974e-12
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)5.974e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.936e-12
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)3.048e-11
Glyma.07G096100 hypothetical protein AT1G25390:AT1G25390:Protein kinase superfamily protein 1Chr07:9005577–9010088 (+)2.321e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)1.602e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.09e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)3.865e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.857e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.857e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.857e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.857e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.486e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.369e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.982e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.982e-12
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)2.597e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.819e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)7.779e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.176e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.176e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.234e-11
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)7.12e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)9.83e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)9.83e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)9.83e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.288e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.49e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.836e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.737e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.494e-12
Glyma.17G099300 hypothetical protein AT3G47610:AT3G47610:transcription regulator/ zinc ion binding protein 1Chr17:7838198–7840795 (-)2.283e-14
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)1.484e-11
Glyma.18G300500 hypothetical protein NA 1Chr18:57841316–57843280 (+)1.775e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.769e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.371e-12