Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04602

Metabolite ID
P04602
Deionized mass
283.0885 Da
Average m/z
284.0969
Average RT
8.2227
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.57e-13
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)5.52e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.852e-12
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)7.469e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.271e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)7.964e-14
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.452e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.946e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.57e-13
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.223e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.223e-12
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)8.968e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)2.998e-11
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)6.282e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.341e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)9.275e-16
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)9.275e-16
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)9.276e-16
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)6.63e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.454e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.852e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.852e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.852e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.852e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)6.181e-12
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)2.217e-11
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)2.621e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)8.586e-13
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)1.87e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.965e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.509e-11
Glyma.11G108500 hypothetical protein NA 1Chr11:8276454–8280498 (-)3.255e-11
Glyma.11G108700 hypothetical protein AT1G08530:AT1G08530:chitinase-like protein 1Chr11:8289960–8293540 (-)1.322e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.337e-15
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.337e-15
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.187e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.187e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)8.698e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)8.204e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.964e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.51e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)3.853e-14
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)5.46e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.46e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.136e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.136e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.136e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)2.44e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.52e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.52e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.52e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.52e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)8.268e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.399e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.961e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.714e-15
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.799e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.798e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.148e-11
Glyma.18G212700 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr18:49942123–49944169 (-)2.671e-12
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)7.034e-13
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)7.151e-11