Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04521

Metabolite ID
P04521
Deionized mass
187.0828 Da
Average m/z
375.1738
Average RT
8.1675
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 4Chr08:9494946–9505931 (-)3.845e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)3.024e-13
Glyma.08G122500 hypothetical protein NA 2Chr08:9441329–9445315 (-)3.714e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 2Chr08:9452604–9458932 (+)3.845e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)6.814e-13
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)6.814e-13
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)6.814e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.89e-12
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.711e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.091e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.693e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.693e-14
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)1.681e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.639e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.817e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.755e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.119e-13
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.723e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.845e-13
Glyma.08G123400 hypothetical protein NA 1Chr08:9486565–9490448 (-)4.55e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)7.854e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.387e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.387e-13
Glyma.08G211100 GLYI-9 putative lactoylglutathione lyase AT1G80160:GLYI7:Lactoylglutathione lyase / glyoxalase I family protein 1Chr08:17046316–17048640 (-)5.93e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.705e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.071e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)6.814e-13
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)6.814e-13
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)6.814e-13
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.499e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)6.814e-13
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)6.814e-13
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.884e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.394e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.394e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.632e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.632e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.632e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)9.408e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)1.202e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.954e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.484e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.381e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.969e-12
Glyma.16G138800 hypothetical protein NA 1Chr16:29609432–29615000 (+)1.271e-12
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)2.245e-13
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)4.797e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.711e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)4.184e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.012e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)3.894e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.753e-13