Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04489

Metabolite ID
P04489
Deionized mass
312.0761 Da
Average m/z
313.0854
Average RT
8.1405
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
147
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

147 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)7.506e-11
Glyma.17G251200 hypothetical protein NA 3Chr17:40605249–40607536 (+)3.922e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)2.448e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.744e-13
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)3.104e-12
Glyma.11G182800 hypothetical protein AT2G27460:AT2G27460:sec23/sec24 transport family protein 2Chr11:25044939–25052549 (+)1.119e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)7.848e-16
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)3.687e-15
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)7.292e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)7.017e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.117e-13
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)1.584e-13
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)9.97e-11
Glyma.16G203300 hypothetical protein AT5G62230:ERL1:ERECTA-like 1 2Chr16:36437330–36445131 (+)2.988e-11
Glyma.17G208400 hypothetical protein NA 2Chr17:34184145–34222159 (-)3.62e-12
Glyma.17G211500 hypothetical protein AT4G32272:AT4G32272:Nucleotide/sugar transporter family protein 2Chr17:34916813–34922875 (+)9.842e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)5.38e-15
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)1.86e-14
Glyma.19G128100 hypothetical protein NA 2Chr19:38728037–38732422 (+)6.023e-15
Glyma.19G128200 hypothetical protein NA 2Chr19:38739769–38743404 (+)3.441e-21
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.054e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)2.229e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.135e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.135e-11
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)6.057e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.277e-15
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)7.769e-14
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.502e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)2.187e-14
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.473e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.628e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.222e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.222e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.125e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.442e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.442e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.442e-15
Glyma.05G142000 hypothetical protein NA 1Chr05:33530449–33539474 (-)7.275e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.38e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.686e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.491e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)2.924e-14
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.665e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.665e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.665e-12
Glyma.06G285000 hypothetical protein AT2G42390:AT2G42390:kinase C substrate, heavy chain-like protein 1Chr06:47349868–47363027 (-)4.339e-12
Glyma.06G301000 hypothetical protein NA 1Chr06:49001317–49005605 (+)2.276e-11
Glyma.06G301100 hypothetical protein AT2G16030:AT2G16030:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr06:49013527–49014231 (+)3.639e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)3.689e-12
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)3.689e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)1.193e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.932e-12
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)5.226e-12
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)1.379e-11
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)6.679e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)8.486e-12
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)6.355e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)4.316e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.346e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)6.393e-12
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)1.509e-12
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)1.529e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)5.584e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.106e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.812e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.167e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.167e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.167e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.167e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.333e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.207e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)9.903e-11
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)1.844e-12
Glyma.11G183200 hypothetical protein AT2G27500:AT2G27500:Glycosyl hydrolase superfamily protein 1Chr11:25070908–25075185 (-)1.101e-13
Glyma.11G183800 hypothetical protein AT5G22450:AT5G22450:spectrin beta chain, brain 1Chr11:25162867–25173439 (-)5.428e-13
Glyma.11G184400 hypothetical protein NA 1Chr11:25256684–25259757 (+)2.76e-12
Glyma.11G184600 hypothetical protein AT4G08960:AT4G08960:phosphotyrosyl phosphatase activator (PTPA) family protein 1Chr11:25265163–25267323 (-)1.635e-11
Glyma.11G184900 hypothetical protein AT3G44530:HIRA:histone chaperone HIRA-like protein 1Chr11:25289268–25298978 (+)1.635e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)8.725e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.629e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.629e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.812e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.812e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.089e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.089e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.859e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.391e-16
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.687e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)3.007e-13
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)3.259e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)5.448e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.019e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.198e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.235e-17
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)8.338e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)1.053e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)1.053e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)5.644e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)5.59e-11
Glyma.14G119800 hypothetical protein AT1G43850:SEU:SEUSS transcriptional co-regulator 1Chr14:16751592–16763348 (-)5.187e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.117e-13
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)3.855e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.855e-11
Glyma.15G107500 hypothetical protein NA 1Chr15:8435042–8443925 (+)9.404e-11
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)1.328e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.071e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.76e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.071e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.071e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.47e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.647e-14
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.218e-11
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)3.591e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)3.434e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)7.506e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)7.506e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)7.506e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)7.506e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.293e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.958e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.397e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.712e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.894e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.317e-12
Glyma.16G141300 hypothetical protein AT4G36710:HAM4:GRAS family transcription factor 1Chr16:29937044–29939337 (+)2.256e-11
Glyma.16G141600 hypothetical protein AT5G66710:AT5G66710:Protein kinase superfamily protein__AT3G50720:AT3G50720:Protein kinase superfamily protein 1Chr16:29970884–29978773 (-)2.256e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.709e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.709e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.081e-13
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)7.515e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)2.753e-11
Glyma.17G207000 hypothetical protein NA 1Chr17:33925621–33935113 (+)3.62e-12
Glyma.17G208500 hypothetical protein NA 1Chr17:34224093–34230310 (-)3.62e-12
Glyma.17G209600 hypothetical protein AT2G25530:AT2G25530:AFG1-like ATPase family protein 1Chr17:34571688–34581787 (-)3.62e-12
Glyma.17G209700 hypothetical protein NA 1Chr17:34586468–34590309 (+)3.62e-12
Glyma.17G211600 hypothetical protein NA 1Chr17:34925097–34929797 (+)1.068e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.588e-13
Glyma.17G219300 hypothetical protein AT1G48270:GCR1:G-protein-coupled receptor 1 1Chr17:37088115–37094715 (+)3.703e-11
Glyma.17G251300 hypothetical protein AT1G19520:NFD5:pentatricopeptide (PPR) repeat-containing protein 1Chr17:40609523–40612369 (+)7.299e-11
Glyma.17G251700 hypothetical protein NA 1Chr17:40625907–40628028 (-)3.922e-13
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)1.889e-11
Glyma.18G252100 hypothetical protein AT1G02090:FUS5:Proteasome component (PCI) domain protein 1Chr18:53885762–53894767 (+)6.367e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)9.738e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.942e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.942e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)3.08e-12
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)1.511e-13