Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04450

Metabolite ID
P04450
Deionized mass
664.1422 Da
Average m/z
665.1460
Average RT
8.1236
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
79
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

79 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.685e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)5.251e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)1.809e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.027e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.422e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)1.963e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.552e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)3.232e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.188e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)2.98e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)8.82e-12
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)8.82e-12
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)8.82e-12
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)8.82e-12
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)8.82e-12
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)8.82e-12
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)8.82e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.428e-14
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)7.04e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)3.709e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)8.862e-11
Glyma.05G219800 TRE1 trehalase 1 AT4G24040:TRE1:trehalase 1 1Chr05:39920183–39925215 (+)3.158e-14
Glyma.05G220100 hypothetical protein AT1G33170:AT1G33170:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:39950499–39956022 (+)3.158e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.048e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.348e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.157e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.871e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.377e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.377e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)9.25e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.277e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)9.312e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)9.312e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)2.856e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)5.286e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)6.476e-11
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 1Chr08:9054060–9063297 (+)5.716e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)1.809e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.027e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.027e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.027e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.027e-12
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)6.803e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.634e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)3.526e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)3.526e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.63e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.629e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.685e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.685e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.124e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)3.662e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)8.086e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)6.024e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.016e-11
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)8.527e-13
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)2.905e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)2.905e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.685e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.685e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.685e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.685e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.713e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.019e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.477e-15
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)6.835e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)9.911e-12
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)2.044e-11
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)2.014e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.096e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.096e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.794e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.794e-12
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)8.161e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)4.493e-11
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)1.425e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.036e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.921e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)4.444e-11