Overview Annotation GWAS Evidence Associated genes

P04310

Metabolite ID
P04310
Deionized mass
87.0316 Da
Average m/z
88.0390
Average RT
8.0807
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
11
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

11 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 2Chr03:169480–172727 (+)5.031e-12
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)5.793e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)5.793e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)5.793e-11
Glyma.09G161400 hypothetical protein NA 1Chr09:38569947–38575128 (+)7.007e-11
Glyma.13G293600 hypothetical protein NA 1Chr13:39321355–39324767 (+)8.554e-12
Glyma.13G293800 hypothetical protein NA 1Chr13:39343173–39346777 (+)2.173e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)9.413e-14
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)1.556e-14
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)6.425e-16
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)3.428e-13