Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04274

Metabolite ID
P04274
Deionized mass
164.0935 Da
Average m/z
165.1005
Average RT
8.0627
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G166400 hypothetical protein AT4G36080:AT4G36080:phosphotransferases/inositol or phosphatidylinositol kinase 4Chr01:50404781–50436297 (-)4.582e-12
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)3.64e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)1.627e-14
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 2Chr07:6307073–6313498 (-)6.443e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.554e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.495e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.495e-11
Glyma.01G001300 hypothetical protein AT2G07050:CAS1:cycloartenol synthase 1 1Chr01:227021–237987 (-)4.234e-11
Glyma.01G166300 hypothetical protein AT3G51230:AT3G51230:chalcone-flavanone isomerase family protein 1Chr01:50402188–50404181 (+)1.293e-11
Glyma.01G166600 hypothetical protein AT2G18000:TAF14:TBP-associated factor 14 1Chr01:50443699–50446896 (-)1.293e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.417e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.417e-12
Glyma.02G062600 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr02:5645621–5648965 (+)5.644e-11
Glyma.02G107400 hypothetical protein NA 1Chr02:10245905–10246706 (-)7.096e-12
Glyma.04G192000 hypothetical protein AT3G48430:REF6:relative of early flowering 6 1Chr04:46279239–46297477 (-)3.367e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.261e-13
Glyma.06G185400 hypothetical protein AT5G65200:PUB38:plant U-box 38 1Chr06:16108185–16111175 (-)1.493e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)3.565e-14
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)5.794e-13
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)8.435e-11
Glyma.06G317900 hypothetical protein AT5G51400:AT5G51400:PLAC8 family protein 1Chr06:50645095–50649256 (+)1.418e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.362e-14
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)8.833e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.554e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.554e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.554e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.554e-11
Glyma.09G065900 hypothetical protein NA 1Chr09:6419980–6421918 (+)1.324e-11
Glyma.09G066000 hypothetical protein NA 1Chr09:6431656–6439981 (-)1.324e-11
Glyma.09G066200 hypothetical protein AT5G57030:LUT2:Lycopene beta/epsilon cyclase protein 1Chr09:6475361–6486120 (+)1.324e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)3.587e-11
Glyma.11G037100 hypothetical protein AT2G35660:CTF2A:FAD/NAD(P)-binding oxidoreductase family protein 1Chr11:2678678–2681764 (-)1.89e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)6.666e-14
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.679e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.678e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.495e-11
Glyma.15G232600 hypothetical protein NA 1Chr15:43719004–43723574 (+)2.241e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)7.804e-13
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)1.108e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)4.18e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.361e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.719e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)4.46e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.467e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.467e-11