Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04202

Metabolite ID
P04202
Deionized mass
121.0179 Da
Average m/z
122.0259
Average RT
8.0187
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)5.141e-12
Glyma.04G064500 hypothetical protein NA 2Chr04:5367346–5372857 (+)5.455e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.969e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.532e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.532e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.679e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)6.189e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.451e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)4.519e-11
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)2.129e-12
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)2.129e-12
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)2.129e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.66e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)9.269e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.312e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.136e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.55e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.006e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.682e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.222e-12
Glyma.09G272300 hypothetical protein AT5G01950:AT5G01950:Leucine-rich repeat protein kinase family protein 1Chr09:48873276–48883421 (-)1.613e-12
Glyma.09G272800 hypothetical protein AT3G08670:AT3G08670:serine/arginine repetitive matrix-like protein 1Chr09:48916725–48921396 (+)1.613e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.07e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)9.699e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)1.25e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.779e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.779e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.846e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.846e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.532e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.952e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.761e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.085e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.76e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.761e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.014e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.679e-11
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)3.401e-11
Glyma.17G244200 hypothetical protein AT2G26560:PLA2A:phospholipase A 2A 1Chr17:39960277–39964490 (-)4.793e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.032e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.032e-12