Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04170

Metabolite ID
P04170
Deionized mass
354.1180 Da
Average m/z
355.1224
Average RT
8.0009
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
51
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

51 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G064500 hypothetical protein NA 2Chr04:5367346–5372857 (+)3.29e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.642e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.505e-13
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.13e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.702e-15
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.573e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.16e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.728e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.826e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.269e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.269e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.269e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.518e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.148e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.757e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)1.05e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)1.05e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)1.05e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.133e-12
Glyma.06G129400 hypothetical protein AT5G24300:SS1:Glycogen/starch synthases, ADP-glucose type 1Chr06:10632042–10640023 (+)8.194e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)2.249e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)2.249e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)6.195e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)1.355e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)6.29e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.642e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.642e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.642e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.642e-12
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)1.974e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)9.959e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.421e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)9.715e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)9.715e-11
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)2.982e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)4.933e-11
Glyma.20G053000 hypothetical protein NA 1Chr20:11983566–11990328 (-)3.457e-11
Glyma.20G053700 hypothetical protein NA 1Chr20:12341598–12348808 (+)3.457e-11
Glyma.20G055400 hypothetical protein NA 1Chr20:13199672–13205467 (+)3.457e-11
Glyma.20G056500 hypothetical protein AT1G35220:AT1G35220:FAM91 carboxy-terminus protein 1Chr20:14773334–14777681 (-)3.457e-11
Glyma.20G056800 hypothetical protein AT2G32970:AT2G32970:G1/S-specific cyclin-E protein 1Chr20:15720600–15729831 (-)3.457e-11
Glyma.20G057300 hypothetical protein NA 1Chr20:16424783–16426060 (-)3.457e-11
Glyma.20G057500 hypothetical protein NA 1Chr20:16724289–16728840 (+)3.457e-11
Glyma.20G058000 hypothetical protein AT1G76490:HMG1:hydroxy methylglutaryl CoA reductase 1 1Chr20:17037758–17043212 (-)3.457e-11
Glyma.20G059300 hypothetical protein NA 1Chr20:17987356–17987736 (-)3.457e-11
Glyma.20G098100 hypothetical protein AT1G56420:AT1G56420:antigenic heat-stable protein 1Chr20:34134555–34139100 (-)3.443e-11
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)7.956e-13
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)3.586e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)5.758e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)2.229e-11
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)1.515e-11