P04164
Metabolite ID
P04164
Deionized mass
520.2115 Da
Average m/z
521.2193
Average RT
7.9983
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
100
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
100 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.17G217900 | hypothetical protein | NA | 4 | Chr17:36771760–36778616 (-) | 2.188e-11 | |
| Glyma.16G147900 | hypothetical protein | NA | 3 | Chr16:30864919–30872425 (+) | 9.387e-11 | |
| Glyma.18G196200 | hypothetical protein | AT3G09100:AT3G09100:mRNA capping enzyme family protein | 3 | Chr18:47102746–47129707 (+) | 9.808e-13 | |
| Glyma.03G019600 | hypothetical protein | AT2G45640:SAP18:SIN3 associated polypeptide P18 | 2 | Chr03:2007617–2009871 (+) | 3.636e-12 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 2 | Chr03:2423540–2428634 (-) | 4.813e-15 | |
| Glyma.11G145000 | hypothetical protein | AT4G27490:RRP41L:3'-5'-exoribonuclease family protein | 2 | Chr11:11117760–11123162 (+) | 1.738e-11 | |
| Glyma.14G176900 | SGF14K | 14-3-3 protein SGF14k | AT1G78300:GRF2:ral regulatory factor 2 | 2 | Chr14:43637893–43642553 (+) | 2.967e-11 |
| Glyma.16G138800 | hypothetical protein | NA | 2 | Chr16:29609432–29615000 (+) | 7.474e-13 | |
| Glyma.16G144700 | hypothetical protein | AT5G66960:AT5G66960:Prolyl oligopeptidase family protein | 2 | Chr16:30514629–30519598 (+) | 1.244e-13 | |
| Glyma.16G146700 | hypothetical protein | NA | 2 | Chr16:30755899–30759360 (-) | 5.998e-12 | |
| Glyma.16G147400 | hypothetical protein | NA | 2 | Chr16:30817535–30821568 (+) | 4.09e-12 | |
| Glyma.17G215800 | Aberrant root formation protein 4 | AT5G11030:ALF4:aberrant root formation protein | 2 | Chr17:36328551–36338097 (+) | 1.017e-13 | |
| Glyma.01G021000 | hypothetical protein | NA | 1 | Chr01:2122589–2125447 (+) | 3.018e-11 | |
| Glyma.01G021600 | hypothetical protein | AT5G65540:AT5G65540:transcription initiation factor TFIID subunit | 1 | Chr01:2189923–2194362 (-) | 6.647e-12 | |
| Glyma.01G021700 | hypothetical protein | NA | 1 | Chr01:2197811–2200232 (+) | 1.636e-11 | |
| Glyma.01G022000 | hypothetical protein | NA | 1 | Chr01:2209688–2210849 (-) | 1.636e-11 | |
| Glyma.01G022200 | hypothetical protein | NA | 1 | Chr01:2212834–2213622 (+) | 1.636e-11 | |
| Glyma.01G031900 | hypothetical protein | AT1G23870:TPS9:trehalose-phosphatase/synthase 9 | 1 | Chr01:3342396–3347771 (+) | 7.826e-11 | |
| Glyma.03G177700 | hypothetical protein | NA | 1 | Chr03:39046772–39051158 (+) | 8.705e-12 | |
| Glyma.04G063900 | hypothetical protein | NA | 1 | Chr04:5310107–5313853 (+) | 6.191e-11 | |
| Glyma.04G086600 | hypothetical protein | NA | 1 | Chr04:7374806–7380808 (+) | 6.578e-11 | |
| Glyma.04G104400 | hypothetical protein | NA | 1 | Chr04:9885009–9889282 (+) | 3.75e-11 | |
| Glyma.04G112200 | hypothetical protein | AT5G51750:SBT1.3:subtilase 1.3 | 1 | Chr04:12562882–12565006 (+) | 6.99e-12 | |
| Glyma.04G190200 | hypothetical protein | AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 | 1 | Chr04:46086785–46089618 (-) | 3.184e-12 | |
| Glyma.04G190700 | hypothetical protein | NA | 1 | Chr04:46143583–46146881 (+) | 3.12e-11 | |
| Glyma.04G190800 | hypothetical protein | AT5G07460:PMSR2:peptidemethionine sulfoxide reductase 2 | 1 | Chr04:46143080–46147709 (-) | 3.12e-11 | |
| Glyma.05G124700 | hypothetical protein | NA | 1 | Chr05:31807311–31817648 (+) | 1.583e-11 | |
| Glyma.05G126400 | hypothetical protein | NA | 1 | Chr05:31961493–31968339 (+) | 8.381e-11 | |
| Glyma.05G137500 | hypothetical protein | NA | 1 | Chr05:33012282–33015297 (-) | 8.958e-11 | |
| Glyma.05G164700 | hypothetical protein | NA | 1 | Chr05:35543931–35549196 (-) | 1.926e-12 | |
| Glyma.05G204600 | hypothetical protein | NA | 1 | Chr05:38801528–38802396 (+) | 5.001e-11 | |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 4.221e-13 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 7.989e-12 | |
| Glyma.06G078400 | hypothetical protein | AT4G31290:AT4G31290:ChaC-like family protein | 1 | Chr06:6068728–6071360 (+) | 4.802e-11 | |
| Glyma.06G079400 | hypothetical protein | NA | 1 | Chr06:6105463–6107101 (+) | 1.279e-11 | |
| Glyma.06G125200 | hypothetical protein | AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 | 1 | Chr06:10209787–10215982 (+) | 8.415e-11 | |
| Glyma.06G125300 | hypothetical protein | AT5G24105:AGP41:arabinogalactan protein 41 | 1 | Chr06:10216506–10218901 (-) | 8.415e-11 | |
| Glyma.06G126900 | hypothetical protein | AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) | 1 | Chr06:10403126–10408307 (-) | 6.465e-11 | |
| Glyma.08G114800 | hypothetical protein | AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein | 1 | Chr08:8792663–8798214 (-) | 5.525e-11 | |
| Glyma.08G150100 | hypothetical protein | AT2G44450:BGLU15:beta glucosidase 15 | 1 | Chr08:11525692–11536927 (+) | 2.016e-11 | |
| Glyma.08G303300 | hypothetical protein | NA | 1 | Chr08:42134782–42139026 (+) | 5.001e-14 | |
| Glyma.08G303400 | hypothetical protein | NA | 1 | Chr08:42139097–42147365 (+) | 5.001e-14 | |
| Glyma.09G082000 | hypothetical protein | NA | 1 | Chr09:9638564–9650178 (+) | 1.157e-12 | |
| Glyma.09G084300 | hypothetical protein | AT2G34680:AIR9:Outer arm dynein light chain 1 protein | 1 | Chr09:10129602–10197250 (-) | 7.994e-12 | |
| Glyma.09G209900 | hypothetical protein | AT1G31930:XLG3:extra-large GTP-binding protein 3 | 1 | Chr09:43412726–43419532 (+) | 3.638e-11 | |
| Glyma.09G249500 | hypothetical protein | NA | 1 | Chr09:47056885–47062577 (+) | 3.226e-11 | |
| Glyma.11G144800 | hypothetical protein | AT2G28250:NCRK:Protein kinase superfamily protein | 1 | Chr11:11096950–11105343 (+) | 1.738e-11 | |
| Glyma.11G161900 | hypothetical protein | NA | 1 | Chr11:14992307–14994409 (-) | 6.982e-11 | |
| Glyma.13G049100 | hypothetical protein | NA | 1 | Chr13:14498952–14506408 (-) | 1.619e-11 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 1.727e-11 | |
| Glyma.13G135700 | hypothetical protein | NA | 1 | Chr13:24812720–24818735 (+) | 1.727e-11 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 1 | Chr13:24820151–24823999 (-) | 1.726e-11 | |
| Glyma.14G069500 | hypothetical protein | AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 | 1 | Chr14:5822246–5825628 (-) | 3.698e-13 | |
| Glyma.14G176600 | hypothetical protein | NA | 1 | Chr14:43565478–43570243 (+) | 7.555e-11 | |
| Glyma.14G177500 | hypothetical protein | AT3G13620:PUT4:Amino acid permease family protein | 1 | Chr14:43740577–43742476 (-) | 1.123e-11 | |
| Glyma.14G178600 | hypothetical protein | NA | 1 | Chr14:43963455–43970275 (+) | 5.639e-11 | |
| Glyma.14G178700 | hypothetical protein | NA | 1 | Chr14:43978407–43980052 (+) | 5.639e-11 | |
| Glyma.14G178800 | hypothetical protein | AT1G28210:ATJ1:DNAJ heat shock family protein | 1 | Chr14:43987725–44003499 (-) | 5.639e-11 | |
| Glyma.14G179000 | hypothetical protein | AT1G12680:PEPKR2:phosphoenolpyruvate carboxylase-related kinase 2 | 1 | Chr14:44030814–44034325 (+) | 4.057e-14 | |
| Glyma.14G179200 | hypothetical protein | AT4G24380:AT4G24380:dihydrofolate reductase | 1 | Chr14:44060802–44063722 (+) | 4.057e-14 | |
| Glyma.14G179900 | hypothetical protein | NA | 1 | Chr14:44227886–44232217 (-) | 1.216e-13 | |
| Glyma.15G121100 | hypothetical protein | NA | 1 | Chr15:9567797–9570248 (+) | 7.573e-16 | |
| Glyma.15G121300 | hypothetical protein | AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 | 1 | Chr15:9584685–9590201 (-) | 1.997e-15 | |
| Glyma.15G121500 | hypothetical protein | AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein | 1 | Chr15:9602794–9615281 (+) | 7.573e-16 | |
| Glyma.15G121800 | hypothetical protein | NA | 1 | Chr15:9643746–9648073 (+) | 7.573e-16 | |
| Glyma.16G134900 | hypothetical protein | AT5G66470:AT5G66470:GTP-binding protein Era-like protein | 1 | Chr16:29214758–29219443 (-) | 5.809e-11 | |
| Glyma.16G137000 | hypothetical protein | NA | 1 | Chr16:29418205–29421765 (-) | 3.918e-11 | |
| Glyma.16G137100 | hypothetical protein | NA | 1 | Chr16:29421091–29421534 (+) | 3.918e-11 | |
| Glyma.16G140800 | hypothetical protein | AT3G50690:AT3G50690:Leucine-rich repeat (LRR) family protein | 1 | Chr16:29854784–29858843 (-) | 1.196e-11 | |
| Glyma.16G141300 | hypothetical protein | AT4G36710:HAM4:GRAS family transcription factor | 1 | Chr16:29937044–29939337 (+) | 6.111e-12 | |
| Glyma.16G141600 | hypothetical protein | AT5G66710:AT5G66710:Protein kinase superfamily protein__AT3G50720:AT3G50720:Protein kinase superfamily protein | 1 | Chr16:29970884–29978773 (-) | 6.111e-12 | |
| Glyma.16G143700 | hypothetical protein | AT3G50830:COR413-PM2:cold-regulated 413-plasma membrane 2 | 1 | Chr16:30388030–30390647 (-) | 8.692e-11 | |
| Glyma.16G144100 | hypothetical protein | NA | 1 | Chr16:30432951–30434052 (-) | 3.925e-18 | |
| Glyma.16G144200 | hypothetical protein | AT3G50380:AT3G50380:vacuolar protein sorting-associated protein, putative (DUF1162) | 1 | Chr16:30434508–30475458 (-) | 5.247e-11 | |
| Glyma.16G144300 | hypothetical protein | NA | 1 | Chr16:30443185–30446450 (+) | 5.247e-11 | |
| Glyma.16G144900 | hypothetical protein | AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein | 1 | Chr16:30549575–30553059 (+) | 4.796e-12 | |
| Glyma.16G145100 | hypothetical protein | NA | 1 | Chr16:30578388–30581421 (-) | 2.657e-16 | |
| Glyma.16G145200 | hypothetical protein | NA | 1 | Chr16:30586018–30588859 (-) | 2.763e-12 | |
| Glyma.16G145600 | hypothetical protein | AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… | 1 | Chr16:30652378–30659548 (+) | 2.657e-16 | |
| Glyma.16G146300 | hypothetical protein | NA | 1 | Chr16:30714315–30716624 (+) | 5.998e-12 | |
| Glyma.16G147000 | hypothetical protein | NA | 1 | Chr16:30773803–30777822 (-) | 2.528e-15 | |
| Glyma.16G147500 | hypothetical protein | NA | 1 | Chr16:30832490–30834904 (+) | 9.761e-11 | |
| Glyma.17G064000 | hypothetical protein | AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein | 1 | Chr17:4924830–4930155 (-) | 1.174e-12 | |
| Glyma.17G064200 | hypothetical protein | AT5G57500:AT5G57500:Galactosyltransferase family protein | 1 | Chr17:4943412–4944357 (-) | 1.174e-12 | |
| Glyma.17G212100 | hypothetical protein | NA | 1 | Chr17:35010757–35014587 (+) | 6.939e-11 | |
| Glyma.17G212300 | hypothetical protein | AT5G25310:AT5G25310:Exostosin family protein | 1 | Chr17:35122156–35129564 (-) | 6.645e-14 | |
| Glyma.17G213000 | hypothetical protein | NA | 1 | Chr17:35353582–35358772 (+) | 6.505e-11 | |
| Glyma.17G215300 | hypothetical protein | AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein | 1 | Chr17:36142245–36146771 (-) | 2.962e-11 | |
| Glyma.17G215700 | hypothetical protein | AT5G11040:TRS120:TRS120 | 1 | Chr17:36319785–36329259 (-) | 1.017e-13 | |
| Glyma.17G258400 | hypothetical protein | AT1G30755:AT1G30755:elongation factor G, putative (DUF668) | 1 | Chr17:41248979–41254225 (+) | 1.173e-11 | |
| Glyma.18G194900 | hypothetical protein | NA | 1 | Chr18:46855096–46855729 (+) | 2.984e-12 | |
| Glyma.18G195500 | hypothetical protein | NA | 1 | Chr18:46967195–46981775 (+) | 6.663e-11 | |
| Glyma.18G195900 | accA-2 | AT2G38040:CAC3:acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit | 1 | Chr18:47054765–47060075 (+) | 6.663e-11 | |
| Glyma.18G197500 | hypothetical protein | NA | 1 | Chr18:47377826–47380850 (+) | 8.287e-12 | |
| Glyma.18G201700 | hypothetical protein | NA | 1 | Chr18:48175554–48180264 (+) | 1.632e-13 | |
| Glyma.18G230700 | hypothetical protein | AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) | 1 | Chr18:51943730–51947645 (+) | 4.974e-11 | |
| Glyma.18G251000 | hypothetical protein | NA | 1 | Chr18:53738009–53740714 (+) | 6.127e-11 | |
| Glyma.18G251900 | hypothetical protein | AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… | 1 | Chr18:53855786–53862322 (-) | 3.398e-12 | |
| Glyma.18G299100 | hypothetical protein | AT5G13420:TRA2:Aldolase-type TIM barrel family protein | 1 | Chr18:57674222–57678396 (+) | 3.22e-11 | |
| Glyma.19G218100 | hypothetical protein | AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 | 1 | Chr19:47082133–47085750 (+) | 3.282e-11 |