Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04039

Metabolite ID
P04039
Deionized mass
333.1503 Da
Average m/z
334.1597
Average RT
7.9405
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
122
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

122 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196900 hypothetical protein NA 5Chr16:35841279–35846894 (-)2.347e-20
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.507e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.473e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)3.675e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 3Chr16:35170253–35173950 (-)1.176e-16
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.838e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)1.223e-11
Glyma.18G107900 hypothetical protein AT1G06490:CalS7:glucan synthase-like 7 3Chr18:12220182–12260477 (+)1.446e-12
Glyma.01G166400 hypothetical protein AT4G36080:AT4G36080:phosphotransferases/inositol or phosphatidylinositol kinase 2Chr01:50404781–50436297 (-)3.463e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)3.445e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.751e-12
Glyma.09G053800 hypothetical protein NA 2Chr09:4737413–4755632 (-)2.315e-12
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 2Chr12:3949453–3957386 (-)2.399e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)7.008e-12
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 2Chr16:35177846–35179798 (+)1.72e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)3.287e-13
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)4.945e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)4.679e-12
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)6.828e-13
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)6.828e-13
Glyma.01G166300 hypothetical protein AT3G51230:AT3G51230:chalcone-flavanone isomerase family protein 1Chr01:50402188–50404181 (+)3.463e-11
Glyma.01G166600 hypothetical protein AT2G18000:TAF14:TBP-associated factor 14 1Chr01:50443699–50446896 (-)3.463e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.553e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.552e-14
Glyma.01G170700 hypothetical protein NA 1Chr01:50793927–50800725 (-)2.334e-11
Glyma.02G061700 hypothetical protein AT2G23450:AT2G23450:Protein kinase superfamily protein 1Chr02:5577271–5582873 (-)9.814e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)2.227e-14
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.943e-15
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.878e-13
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)3.268e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.36e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.677e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.677e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.677e-11
Glyma.05G130600 hypothetical protein AT1G30040:GA2OX2:gibberellin 2-oxidase 1Chr05:32352085–32354865 (+)7.674e-12
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)4.336e-14
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)9.011e-13
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)2.676e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)7.473e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.632e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.69e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.739e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.274e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.274e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)7.623e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.809e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.205e-12
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)4.097e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)5.858e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.872e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)9.914e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)9.751e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.751e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.751e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.751e-12
Glyma.08G136700 hypothetical protein NA 1Chr08:10457207–10460163 (-)1.901e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.129e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.155e-11
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)4.05e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)4.692e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)6.392e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)4.928e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)9.324e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)9.587e-12
Glyma.11G000700 hypothetical protein AT4G34150:AT4G34150:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr11:33497–35198 (+)5.838e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)7.815e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.36e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.36e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.36e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.36e-13
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)5.526e-13
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)3.986e-15
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.706e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.706e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.706e-11
Glyma.11G154900 PRP3 NA 1Chr11:12643089–12645488 (+)8.957e-11
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)3.032e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.212e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.212e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.678e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.507e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.34e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.459e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)9.459e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)9.459e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.122e-11
Glyma.13G219300 hypothetical protein AT1G30190:AT1G30190:cotton fiber protein 1Chr13:33254523–33255542 (+)5.748e-11
Glyma.13G219700 hypothetical protein AT1G61280:AT1G61280:Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit__AT2G39445:AT2G39445:Phos… 1Chr13:33268846–33272890 (-)5.748e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)5.504e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.504e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.769e-14
Glyma.15G139000 hypothetical protein NA 1Chr15:11314329–11317181 (-)5.859e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)3.118e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)2.646e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.619e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.343e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)3.675e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)3.675e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.751e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.372e-14
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.538e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.57e-11
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)4.134e-13
Glyma.16G189500 hypothetical protein NA 1Chr16:35202920–35206459 (-)9.679e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)5.882e-14
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)4.02e-11
Glyma.16G197200 hypothetical protein NA 1Chr16:35854742–35861472 (-)5.389e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.838e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.223e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.622e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.622e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)6.763e-12
Glyma.17G118900 hypothetical protein NA 1Chr17:9401882–9402864 (+)3.668e-13
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)9.501e-14
Glyma.17G215200 hypothetical protein NA 1Chr17:36125880–36142936 (+)2.39e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)8.213e-11
Glyma.17G215400 hypothetical protein NA 1Chr17:36163614–36164915 (+)1.269e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.553e-19
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)1.137e-14
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)7.401e-11
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)2.886e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)1.123e-11