Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P03942

Metabolite ID
P03942
Deionized mass
158.1076 Da
Average m/z
159.1146
Average RT
7.9054
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
82
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

82 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)3.403e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.909e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)5.483e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)8.742e-14
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)3.454e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)5.704e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.565e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.953e-11
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)4.741e-11
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)4.741e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)7.686e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)7.686e-13
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)9.043e-12
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)1.338e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)7e-11
Glyma.03G135600 hypothetical protein NA 1Chr03:35109981–35110632 (-)9.981e-11
Glyma.04G044600 hypothetical protein NA 1Chr04:3556928–3559705 (-)4.086e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)6.892e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)4.22e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.596e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.566e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.566e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.121e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.504e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.504e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.504e-13
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)9.202e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)9.029e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.617e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.617e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)3.314e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)5.301e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.026e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)3.163e-12
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)8.838e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)8.837e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)3.202e-11
Glyma.08G099800 hypothetical protein NA 1Chr08:7636648–7639681 (+)9.438e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.222e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.678e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)4.78e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)2.56e-13
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)2.56e-13
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)4.21e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)6.563e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.208e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.208e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.208e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.213e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.213e-12
Glyma.13G149700 hypothetical protein AT3G10040:AT3G10040:sequence-specific DNA binding transcription factor 1Chr13:26321941–26324172 (+)5.56e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)6.262e-15
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)2.963e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)2.686e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)9.852e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.93e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.961e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.953e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.084e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.894e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.084e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.084e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)8.214e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)8.214e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)3.403e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)3.403e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)3.403e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)3.403e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.701e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)5.483e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)5.483e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.874e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.091e-12
Glyma.16G165300 hypothetical protein NA 1Chr16:32447317–32449688 (-)4.15e-11
Glyma.16G167500 hypothetical protein NA 1Chr16:32707122–32710495 (+)2.629e-11
Glyma.16G178800 hypothetical protein NA 1Chr16:33950003–33953968 (-)8.423e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.855e-15
Glyma.17G118900 hypothetical protein NA 1Chr17:9401882–9402864 (+)1.083e-12
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)1.496e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.293e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)4.698e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.491e-11