Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P03886

Metabolite ID
P03886
Deionized mass
237.0625 Da
Average m/z
238.0690
Average RT
7.8889
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)3.921e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.418e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.418e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.418e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.289e-12
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)5.236e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.539e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.671e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.503e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.503e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.195e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.784e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.784e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.784e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.189e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.738e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.445e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.418e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.418e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.418e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.418e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.418e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)6.675e-12
Glyma.09G281400 hypothetical protein AT3G18620:AT3G18620:DHHC-type zinc finger family protein 1Chr09:49668985–49676216 (-)2.195e-11
Glyma.09G281700 hypothetical protein NA 1Chr09:49705303–49733182 (-)2.195e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)4.438e-12
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)1.49e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)8.391e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)8.391e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.459e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.798e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.888e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)1.165e-11
Glyma.18G262800 hypothetical protein NA 1Chr18:54832649–54833890 (+)5.476e-12
Glyma.18G263200 hypothetical protein NA 1Chr18:54852891–54861158 (+)3.846e-11
Glyma.18G263300 hypothetical protein AT5G39420:cdc2cAt:CDC2C 1Chr18:54865827–54872924 (-)9.474e-12
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)2.229e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)5.72e-15
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)3.501e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)5.001e-11
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)6.838e-11
Glyma.18G272000 hypothetical protein NA 1Chr18:55503155–55508039 (+)5.346e-11
Glyma.18G272100 hypothetical protein AT5G15630:IRX6:COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family 1Chr18:55506268–55509726 (-)5.346e-11
Glyma.18G273500 hypothetical protein AT5G15800:SEP1:K-box region and MADS-box transcription factor family protein 1Chr18:55619766–55625860 (+)3.508e-11
Glyma.19G247800 hypothetical protein NA 1Chr19:49385792–49388122 (-)2.941e-11