Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P03868

Metabolite ID
P03868
Deionized mass
176.0466 Da
Average m/z
177.0538
Average RT
7.8827
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
68
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

68 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)4.238e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)5.42e-14
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.335e-11
Glyma.03G035500 hypothetical protein NA 2Chr03:4289118–4294184 (+)5.604e-12
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)3.974e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.249e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)2.848e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.843e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)7.219e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)5.262e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)2.69e-14
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)2.232e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)4.812e-18
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)4.812e-18
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.921e-11
Glyma.02G060500 hypothetical protein AT2G23740:SUVR5:histone-lysine N-methyltransferase SUVR5 1Chr02:5473294–5489985 (-)3.1e-11
Glyma.02G060700 hypothetical protein AT5G66600:AT5G66600:electron transporter, putative (Protein of unknown function, DUF547) 1Chr02:5508103–5512617 (+)5.352e-13
Glyma.02G061700 hypothetical protein AT2G23450:AT2G23450:Protein kinase superfamily protein 1Chr02:5577271–5582873 (-)7.948e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)4.798e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.889e-15
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.377e-14
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)7.65e-13
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)9.756e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)9.373e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)4.895e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)6.402e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)7.997e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.959e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.424e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.281e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.281e-11
Glyma.06G126700 hypothetical protein AT5G53120:SPDS3:spermidine synthase 3 1Chr06:10384771–10389578 (-)3.889e-11
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)6.47e-12
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)6.47e-12
Glyma.06G309400 hypothetical protein AT5G07040:AT5G07040:RING/U-box superfamily protein 1Chr06:49792092–49792649 (+)3.462e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.753e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.249e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.249e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.249e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.249e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)4.899e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.893e-17
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.446e-13
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)3.421e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)3.395e-11
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)2.268e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.543e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.612e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.612e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.941e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.178e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.844e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.298e-11
Glyma.15G257500 hypothetical protein NA 1Chr15:48713244–48717192 (+)3.534e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)6.96e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.123e-14
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.335e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.335e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.282e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.281e-14
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)8.458e-11
Glyma.16G178800 hypothetical protein NA 1Chr16:33950003–33953968 (-)3.95e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.306e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.306e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)1.304e-11
Glyma.18G301600 hypothetical protein AT2G33490:AT2G33490:hydroxyproline-rich glycoprotein family protein 1Chr18:57939468–57945328 (+)6.066e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.69e-14
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)3.962e-11