Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P03780

Metabolite ID
P03780
Deionized mass
127.0338 Da
Average m/z
128.0410
Average RT
7.8460
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
43
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

43 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)4.613e-16
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)9.384e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.423e-11
Glyma.16G161500 hypothetical protein NA 2Chr16:32076715–32092322 (-)1.548e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)6.136e-11
Glyma.19G026200 hypothetical protein AT5G39420:cdc2cAt:CDC2C 2Chr19:3274957–3281320 (+)8.283e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)8.283e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.95e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.95e-11
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)8.655e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)9.588e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.901e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.612e-11
Glyma.06G145200 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr06:11831210–11841320 (+)8.204e-13
Glyma.06G145300 hypothetical protein AT5G05340:PRX52:Peroxidase superfamily protein 1Chr06:11849535–11851671 (+)8.081e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)8.976e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.513e-12
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.513e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.081e-13
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)7.2e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.136e-11
Glyma.11G182800 hypothetical protein AT2G27460:AT2G27460:sec23/sec24 transport family protein 1Chr11:25044939–25052549 (+)8.872e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.022e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.022e-13
Glyma.12G193800 hypothetical protein AT2G05710:ACO3:aconitase 3 1Chr12:35551596–35559129 (+)1.916e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.958e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)9.384e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)3.506e-11
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)1.195e-11
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)1.091e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.423e-11
Glyma.14G179000 hypothetical protein AT1G12680:PEPKR2:phosphoenolpyruvate carboxylase-related kinase 2 1Chr14:44030814–44034325 (+)4.328e-11
Glyma.14G179200 hypothetical protein AT4G24380:AT4G24380:dihydrofolate reductase 1Chr14:44060802–44063722 (+)4.328e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)6.434e-12
Glyma.16G159100 hypothetical protein NA 1Chr16:31889835–31894662 (+)2.967e-12
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)3.062e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)7.659e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.924e-14
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.746e-11
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)2.033e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)7.522e-11
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)1.725e-12
Glyma.20G108700 hypothetical protein AT1G09290:AT1G09290:uncharacterized protein 1Chr20:35109869–35115132 (-)5.389e-11