Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P03729

Metabolite ID
P03729
Deionized mass
226.0876 Da
Average m/z
227.0955
Average RT
7.8242
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
55
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

55 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)2.639e-11
Glyma.18G063200 hypothetical protein NA 2Chr18:5779244–5784529 (+)6.108e-12
Glyma.18G063400 hypothetical protein AT2G29940:ABCG31:pleiotropic drug resistance 3 2Chr18:5796259–5805903 (-)6.108e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.928e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.927e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.201e-16
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)2.161e-14
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)7.718e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)3.859e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)5.054e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.936e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.451e-14
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)1.019e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.218e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.587e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.985e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.549e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.768e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.768e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)3.736e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.441e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.288e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.191e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.766e-11
Glyma.09G133800 hypothetical protein NA 1Chr09:33268295–33269240 (+)3.732e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)7.554e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)3.615e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.258e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.693e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.382e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.693e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.693e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.828e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.004e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)4.186e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.947e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.947e-11
Glyma.18G062800 hypothetical protein NA 1Chr18:5752483–5753187 (+)6.108e-12
Glyma.18G064000 hypothetical protein AT1G07230:NPC1:non-specific phospholipase C1 1Chr18:5847976–5851846 (-)6.11e-12
Glyma.18G064700 hypothetical protein AT5G58930:AT5G58930:__AT3G46990:AT3G46990:DUF740 family protein, putative (DUF740) 1Chr18:5893632–5895734 (+)6.11e-12
Glyma.18G065200 hypothetical protein NA 1Chr18:5946779–5949585 (+)8.737e-11
Glyma.18G065700 hypothetical protein AT2G29630:THIC:thiaminC 1Chr18:6008424–6016165 (+)6.108e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)8.919e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)6.426e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)8.919e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)8.919e-11
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)8.841e-11
Glyma.18G105800 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein 1Chr18:11773374–11782733 (+)5.077e-11
Glyma.18G106300 hypothetical protein NA 1Chr18:11900700–11905446 (-)5.077e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)2.382e-13
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)6.103e-13
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)6.103e-13
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)1.404e-12
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)3.667e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.479e-11