Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P03714

Metabolite ID
P03714
Deionized mass
472.1618 Da
Average m/z
473.1733
Average RT
7.8121
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.309e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)7.869e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)5.955e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.271e-15
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.309e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.478e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.085e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.085e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)9.847e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)2.089e-11
Glyma.06G091500 hypothetical protein NA 1Chr06:7175769–7178554 (-)4.064e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.593e-15
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.593e-15
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.593e-15
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)7.928e-11
Glyma.06G289300 hypothetical protein AT2G20570:GPRI1:GBF's pro-rich region-interacting factor 1 1Chr06:47797509–47802933 (+)8.132e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)6.158e-11
Glyma.11G239000 hypothetical protein AT5G10120:AT5G10120:Ethylene insensitive 3 family protein 1Chr11:33337797–33339122 (-)3.085e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.252e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.252e-14
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)9.119e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.305e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.305e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.379e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.923e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.271e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)8.966e-13
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.362e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)6.481e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.481e-11
Glyma.15G154600 hypothetical protein AT2G34900:IMB1:Transcription factor GTE6 1Chr15:12869005–12877308 (-)2.324e-11
Glyma.15G154800 hypothetical protein AT1G30840:PUP4:purine permease 4 1Chr15:12885652–12899379 (+)2.324e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)7.869e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)7.869e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)7.869e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)7.869e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.107e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.109e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.77e-13
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.755e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)2.891e-11
Glyma.20G038200 hypothetical protein NA 1Chr20:5960216–5962739 (+)2.397e-11