Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P03673

Metabolite ID
P03673
Deionized mass
551.1668 Da
Average m/z
552.1756
Average RT
7.7823
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
60
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

60 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)9.485e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)9.371e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)1.595e-18
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.264e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.355e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)9.973e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)7.829e-12
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.314e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.355e-12
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)8.282e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.821e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.821e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.451e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.858e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)7.785e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.631e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.599e-12
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)8.289e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)3.765e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)6.15e-11
Glyma.09G209800 hypothetical protein NA 1Chr09:43411309–43411773 (+)7.26e-11
Glyma.09G210000 hypothetical protein AT5G45620:AT5G45620:Proteasome component (PCI) domain protein 1Chr09:43422744–43428344 (-)7.26e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)7.288e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)7.236e-11
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)1.571e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.604e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.604e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.318e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)9.228e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)9.228e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.585e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)5.585e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)5.584e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.735e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)9.973e-11
Glyma.14G179000 hypothetical protein AT1G12680:PEPKR2:phosphoenolpyruvate carboxylase-related kinase 2 1Chr14:44030814–44034325 (+)3.143e-12
Glyma.14G179200 hypothetical protein AT4G24380:AT4G24380:dihydrofolate reductase 1Chr14:44060802–44063722 (+)3.143e-12
Glyma.14G179900 hypothetical protein NA 1Chr14:44227886–44232217 (-)4.509e-14
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)6.222e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.608e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.469e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.608e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.608e-15
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)9.679e-13
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.236e-13
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)2.634e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.236e-13
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.314e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)3.532e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.991e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.991e-12
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)1.18e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.355e-12
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)4.449e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)2.128e-12
Glyma.18G265900 hypothetical protein NA 1Chr18:55040041–55042737 (-)3.485e-11
Glyma.18G266200 hypothetical protein NA 1Chr18:55065716–55066843 (-)9.192e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.841e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)3.048e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.749e-11