Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P03559

Metabolite ID
P03559
Deionized mass
240.0210 Da
Average m/z
241.0270
Average RT
7.7087
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 7Chr03:2202325–2234931 (+)5.257e-12
Glyma.03G021000 hypothetical protein NA 3Chr03:2148298–2162954 (-)5.702e-11
Glyma.01G173900 hypothetical protein NA 2Chr01:51092004–51094319 (+)2.047e-11
Glyma.01G174100 hypothetical protein NA 2Chr01:51102207–51104922 (+)5.368e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 2Chr03:2240686–2246512 (-)3.152e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)6.789e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)6.789e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)5.991e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)5.991e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)5.99e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 2Chr12:3949453–3957386 (-)1.438e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.198e-11
Glyma.02G081600 hypothetical protein NA 1Chr02:7054190–7055955 (-)4.1e-12
Glyma.02G081900 hypothetical protein AT1G43650:UMAMIT22:nodulin MtN21 /EamA-like transporter family protein 1Chr02:7075646–7080163 (-)1.799e-12
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)1.754e-11
Glyma.03G021100 hypothetical protein AT1G12650:AT1G12650:rRNA biosis RRP36-like protein 1Chr03:2162406–2167712 (+)7.392e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.55e-12
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)7.932e-11
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)4.521e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.003e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.597e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.05e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)3.512e-14
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)3.416e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.796e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)4.514e-11
Glyma.08G116400 hypothetical protein NA 1Chr08:8947598–8949573 (-)2.98e-12
Glyma.08G116700 hypothetical protein NA 1Chr08:8997512–9003565 (+)2.695e-11
Glyma.08G116900 hypothetical protein NA 1Chr08:9013669–9016124 (+)9.667e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)9.347e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)9.347e-11
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)4.439e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.586e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)6.789e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)6.789e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)6.789e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)7.738e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)5.991e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)5.991e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)5.991e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)5.991e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)5.991e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)8.504e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)4.141e-13
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)1.069e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)3.7e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.289e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.6e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.891e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)4.767e-14
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)9.715e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.967e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.521e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)5.141e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)2.227e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.181e-11
Glyma.18G039500 hypothetical protein AT5G37770:TCH2:EF hand calcium-binding protein family 1Chr18:3218263–3219353 (+)4.797e-13
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)8.919e-11
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)4.745e-12
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)1.826e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)3.437e-13
Glyma.20G112600 hypothetical protein AT5G04310:AT5G04310:Pectin lyase-like superfamily protein 1Chr20:35468911–35474203 (+)6.151e-11