Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P03540

Metabolite ID
P03540
Deionized mass
244.0553 Da
Average m/z
245.0616
Average RT
7.6975
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
46
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

46 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 3Chr05:32421116–32425198 (-)1.624e-11
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)4.815e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 2Chr05:32376592–32384905 (+)1.833e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.22e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)5.107e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)1.612e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)4.187e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.896e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.896e-13
Glyma.02G107400 hypothetical protein NA 1Chr02:10245905–10246706 (-)1.558e-13
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.641e-11
Glyma.05G122300 hypothetical protein AT3G60360:EDA14:embryo sac development arrest 14 1Chr05:31585853–31588967 (-)5.03e-11
Glyma.05G124100 hypothetical protein AT5G44450:AT5G44450:alpha amino-terminal protein methyltransferase 1Chr05:31769844–31775954 (-)3.346e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.652e-13
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)9.162e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.988e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.143e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.303e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.303e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.812e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.983e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.983e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.983e-14
Glyma.05G131100 hypothetical protein AT5G60620:GPAT9:glycerol-3-phosphate acyltransferase 9 1Chr05:32411641–32419257 (+)1.624e-11
Glyma.05G131500 hypothetical protein AT5G44800:CHR4:chromatin remodeling 4 1Chr05:32446303–32473428 (+)1.207e-11
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)4.224e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.592e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.22e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.22e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.22e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.22e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.438e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.396e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.854e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.854e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)5.107e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.45e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.314e-13
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)6.794e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)7.774e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.875e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.58e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)2.047e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.048e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.492e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.492e-11