Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P03333

Metabolite ID
P03333
Deionized mass
424.0648 Da
Average m/z
425.0710
Average RT
7.3650
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
54
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

54 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)6.222e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)3.634e-11
Glyma.09G042600 hypothetical protein AT5G49150:GEX2:gamete expressed 2 2Chr09:3636044–3644796 (-)2.155e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 2Chr16:30652378–30659548 (+)7.439e-11
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)7.6e-12
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)1.94e-11
Glyma.02G081900 hypothetical protein AT1G43650:UMAMIT22:nodulin MtN21 /EamA-like transporter family protein 1Chr02:7075646–7080163 (-)8.045e-12
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)1.458e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 1Chr03:2202325–2234931 (+)7.091e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)1.484e-11
Glyma.03G022200 hypothetical protein NA 1Chr03:2326204–2327764 (+)2.092e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.719e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.257e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.194e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.496e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.459e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)5.53e-19
Glyma.06G289400 hypothetical protein AT2G20580:RPN1A:26S proteasome regulatory subunit S2 1A__AT4G28470:RPN1B:26S proteasome regulatory subunit S2 1B 1Chr06:47813934–47821512 (+)4.228e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)7.02e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)6.222e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)6.222e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.83e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.705e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.932e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)4.352e-15
Glyma.12G049500 hypothetical protein AT2G43560:AT2G43560:FKBP-like peptidyl-prolyl cis-trans isomerase family protein 1Chr12:3547790–3551313 (+)2.734e-11
Glyma.12G050200 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr12:3600553–3604637 (-)2.734e-11
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)3.229e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)7.898e-12
Glyma.13G182200 hypothetical protein AT3G45100:SETH2:UDP-Glycosyltransferase superfamily protein 1Chr13:29529252–29533936 (+)1.187e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.238e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)6.779e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.729e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)4.976e-12
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)8.502e-11
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 1Chr14:47664851–47670630 (+)4.878e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.819e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.171e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)2.07e-13
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)4.729e-15
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.809e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.199e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)9.085e-15
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.931e-11
Glyma.18G098900 hypothetical protein NA 1Chr18:10297476–10305043 (+)3.031e-11
Glyma.18G099000 hypothetical protein AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein 1Chr18:10326925–10347143 (-)3.031e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)7.6e-12
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)6.009e-12
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)7.6e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.177e-11
Glyma.18G273000 hypothetical protein NA 1Chr18:55575628–55582063 (-)3.17e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.29e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.291e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)3.019e-11