Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P02928

Metabolite ID
P02928
Deionized mass
311.0577 Da
Average m/z
312.0662
Average RT
6.0909
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)2.76e-14
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)2.562e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)4.63e-11
Glyma.12G018000 hypothetical protein NA 2Chr12:1252709–1256330 (-)3.596e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)6.472e-13
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)3.398e-11
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)3.398e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)3.227e-13
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.976e-16
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)5.147e-14
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.347e-15
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.332e-14
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)2.128e-13
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)2.128e-13
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)2.128e-13
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)2.128e-13
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)2.128e-13
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)2.128e-13
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)2.128e-13
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)2.562e-12
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)2.464e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.273e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.309e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)2.484e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)2.484e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)9.877e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.929e-13
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)7.358e-11
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)7.358e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.875e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)2.748e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)6.112e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)6.112e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.013e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.117e-11
Glyma.09G177400 hypothetical protein NA 1Chr09:40183616–40184826 (-)6.955e-11
Glyma.12G003500 hypothetical protein AT5G61670:AT5G61670:orange protein 1Chr12:285588–289372 (-)1.462e-12
Glyma.12G003900 hypothetical protein AT5G51550:EXL3:EXORDIUM like 3 1Chr12:302437–304546 (+)4.221e-12
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)2.618e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)2.618e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)1.489e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.676e-15
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)4.873e-13
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.322e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.53e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)7.798e-11
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)7.29e-12
Glyma.18G195000 hypothetical protein NA 1Chr18:46858462–46861415 (+)7e-12
Glyma.18G195500 hypothetical protein NA 1Chr18:46967195–46981775 (+)1.154e-13
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)9.725e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)4.508e-14
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)4.508e-14
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)1.802e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.565e-16
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.565e-16
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.892e-15
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)1.056e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.144e-11