Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P02905

Metabolite ID
P02905
Deionized mass
294.0879 Da
Average m/z
295.0981
Average RT
6.0453
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
48
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

48 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)5.444e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)8.965e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)7.007e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)7.324e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)2.354e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.036e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.036e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.601e-15
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.175e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.175e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)7.984e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)4.3e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.038e-11
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)6.584e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.349e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)4.493e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)8.244e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.885e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.08e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)5.587e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)6.657e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)5.444e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)5.444e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)5.583e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.073e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.277e-11
Glyma.11G119600 hypothetical protein AT2G16130:PMT2:polyol/monosaccharide transporter 2 1Chr11:9127497–9129972 (-)7.981e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.324e-14
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.104e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.436e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.436e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.036e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)3.188e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.055e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.315e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.268e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.315e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.315e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.799e-11
Glyma.15G140400 hypothetical protein NA 1Chr15:11495189–11495691 (+)5.486e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)2.474e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)2.474e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.995e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)4.406e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.079e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)6.043e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)5.87e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.277e-11