Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P02780

Metabolite ID
P02780
Deionized mass
248.1256 Da
Average m/z
249.1317
Average RT
5.8744
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)8.728e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)7.408e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)5.194e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)1.653e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.415e-13
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)8.211e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.825e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.208e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.282e-15
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.451e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.317e-15
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.317e-15
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.447e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.237e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.237e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.237e-15
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)3.714e-14
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)1.943e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.613e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.952e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.905e-17
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.668e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.668e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)2.274e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)4.791e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)1.211e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)2.933e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)2.933e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)8.728e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)8.728e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.421e-13
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.78e-11
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)3.577e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.273e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.245e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.656e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.656e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.656e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.656e-14
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)9.847e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.738e-12
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)9.847e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.128e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.628e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.628e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.263e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.207e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.263e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.263e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.282e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.516e-13
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)9.006e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)3.587e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)6.537e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.408e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)7.408e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)7.408e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.596e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.88e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.88e-14
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)2.144e-14
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)1.495e-12