Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P02600

Metabolite ID
P02600
Deionized mass
639.2319 Da
Average m/z
640.2400
Average RT
5.4408
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)1.233e-17
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.857e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 3Chr16:36806718–36809299 (+)2.156e-17
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.103e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)1.67e-15
Glyma.17G039200 hypothetical protein NA 3Chr17:2903795–2919460 (+)2.118e-12
Glyma.01G034300 hypothetical protein NA 2Chr01:3573149–3579461 (-)4.139e-13
Glyma.10G272800 hypothetical protein AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS 2Chr10:49530856–49539222 (+)7.951e-17
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.161e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.635e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)8.168e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.779e-13
Glyma.16G207700 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 2Chr16:36739878–36743378 (-)3.031e-13
Glyma.18G206000 hypothetical protein NA 2Chr18:48972350–48976819 (+)2.704e-15
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)4.704e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.401e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.468e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.306e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.634e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.634e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)1.805e-12
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)1.719e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.858e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.858e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)8.371e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)3.235e-12
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)8.689e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)6.532e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.095e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)5.46e-12
Glyma.14G084200 hypothetical protein NA 1Chr14:7375402–7379417 (-)5.832e-11
Glyma.14G087900 hypothetical protein NA 1Chr14:7887761–7897469 (+)9.872e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.909e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.635e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.038e-12
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)8.021e-11
Glyma.16G018000 hypothetical protein NA 1Chr16:1601748–1607341 (-)4.429e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.606e-11
Glyma.16G024600 hypothetical protein AT1G01320:AT1G01320:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:2374161–2391216 (-)8.149e-11
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)2.264e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.439e-13
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.439e-13
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)7.246e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)9.324e-13
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)5.423e-13
Glyma.16G116300 hypothetical protein AT4G35570:HMGB5:high mobility group B5__AT2G17560:HMGB4:high mobility group B4 1Chr16:25905311–25906957 (-)3.449e-13
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)3.888e-11
Glyma.16G207600 hypothetical protein AT5G23550:AT5G23550:Got1/Sft2-like vescicle transport protein family 1Chr16:36733685–36738992 (+)4.539e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)1.1e-13
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)1.715e-13
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)1.192e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)2.26e-13
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.103e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.67e-15
Glyma.17G038400 hypothetical protein AT3G17330:ECT6:evolutionarily conserved C-terminal region 6 1Chr17:2836787–2841979 (-)6.381e-13
Glyma.17G038500 hypothetical protein NA 1Chr17:2843533–2853547 (-)6.382e-13
Glyma.17G039300 hypothetical protein AT4G15230:ABCG30:pleiotropic drug resistance 2__AT4G15233:ABCG42:ABC-2 and Plant PDR ABC-type transporter family protei… 1Chr17:2918657–2932426 (-)8.145e-13
Glyma.17G039400 hypothetical protein NA 1Chr17:2933278–2933816 (+)7.004e-12