Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P02430

Metabolite ID
P02430
Deionized mass
346.0836 Da
Average m/z
347.0918
Average RT
5.2455
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.613e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.613e-12
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)5.817e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 2Chr16:30652378–30659548 (+)7.239e-11
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)2.398e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)2.497e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.47e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.165e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.994e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)4.613e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)4.613e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)4.613e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.255e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.017e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.017e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.017e-11
Glyma.06G126400 hypothetical protein AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein 1Chr06:10356650–10362151 (-)5.262e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)8.703e-11
Glyma.06G129400 hypothetical protein AT5G24300:SS1:Glycogen/starch synthases, ADP-glucose type 1Chr06:10632042–10640023 (+)9.299e-11
Glyma.06G133700 Pyridoxal reductase, chloroplastic AT5G53580:PLR1:NAD(P)-linked oxidoreductase superfamily protein 1Chr06:10995438–10999422 (-)7.408e-11
Glyma.08G124200 hypothetical protein AT1G30500:NF-YA7:nuclear factor Y, subunit A7 1Chr08:9531363–9535558 (+)1.248e-11
Glyma.08G182400 hypothetical protein NA 1Chr08:14625596–14626713 (+)9.584e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)2.353e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)2.353e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.245e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)3.169e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.668e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.668e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.946e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.946e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.043e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.043e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.613e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)5.154e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.355e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.902e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.949e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.061e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)7.96e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.162e-13
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.737e-13
Glyma.18G268900 hypothetical protein AT3G02170:LNG2:longifolia2__AT5G15580:LNG1:longifolia1 1Chr18:55259873–55265930 (-)3.507e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.056e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.056e-11
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)6.338e-11