Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P02275

Metabolite ID
P02275
Deionized mass
404.9932 Da
Average m/z
406.0006
Average RT
5.0535
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)4.548e-14
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.222e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)2.406e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.063e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.692e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)6.5e-12
Glyma.13G133800 hypothetical protein AT3G53520:UXS1:UDP-glucuronic acid decarboxylase 1 2Chr13:24601574–24606756 (-)2.91e-12
Glyma.13G133900 hypothetical protein NA 2Chr13:24613843–24616128 (+)2.91e-12
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)3.355e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)7.121e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.612e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.582e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.582e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.582e-11
Glyma.05G191600 hypothetical protein AT2G13680:CALS5:callose synthase 5 1Chr05:37711639–37726572 (-)9.28e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.747e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.789e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.789e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.103e-14
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.565e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)3.25e-12
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)3.25e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)6.342e-13
Glyma.08G142200 hypothetical protein NA 1Chr08:10833827–10834390 (-)3.864e-11
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 1Chr08:10843433–10846761 (-)3.864e-11
Glyma.08G142900 hypothetical protein AT2G21860:AT2G21860:violaxanthin de-epoxidase-like protein 1Chr08:10869437–10872439 (+)2.788e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.121e-13
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)4.066e-13
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.674e-11
Glyma.10G037300 hypothetical protein AT3G54670:TTN8:Structural maintenance of chromosomes (SMC) family protein 1Chr10:3270545–3283318 (-)6.905e-11
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)8.07e-11
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)9.816e-11
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)9.816e-11
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)9.816e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)4.532e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)2.607e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)5.986e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.385e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.385e-12
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)1.122e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)9.239e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.986e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.986e-11
Glyma.13G134000 hypothetical protein NA 1Chr13:24618272–24619048 (-)2.91e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.548e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.076e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.584e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)5.584e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)5.584e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.222e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.222e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.222e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.222e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.607e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)2.063e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.063e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)5.836e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.881e-14
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)1.33e-13
Glyma.18G055800 hypothetical protein NA 1Chr18:4865252–4867137 (-)8.686e-11
Glyma.19G247800 hypothetical protein NA 1Chr19:49385792–49388122 (-)6.352e-11
Glyma.19G248000 hypothetical protein AT3G04470:AT3G04470:Ankyrin repeat family protein 1Chr19:49394278–49398822 (-)3.292e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.281e-11