Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P01957

Metabolite ID
P01957
Deionized mass
114.0303 Da
Average m/z
115.0383
Average RT
4.6690
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
74
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

74 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)9.445e-14
Glyma.16G210200 hypothetical protein NA 4Chr16:36933402–36938940 (+)1.215e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)1.537e-13
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)4.455e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)5.798e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)8.394e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)8.394e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.85e-16
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.716e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)1.541e-11
Glyma.01G030500 hypothetical protein NA 1Chr01:3189212–3200277 (+)5.162e-12
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)6.587e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.863e-15
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)1.475e-13
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.927e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.988e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.971e-13
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)6.312e-11
Glyma.02G290800 hypothetical protein AT5G07470:PMSR3:peptidemethionine sulfoxide reductase 3 1Chr02:47032515–47036279 (-)5.903e-11
Glyma.02G291200 hypothetical protein NA 1Chr02:47062620–47065072 (-)5.903e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)4.412e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.073e-11
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)1.558e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.65e-15
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)7.167e-12
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)2.288e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)5.377e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.264e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.629e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.318e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.688e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)5.026e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)6.503e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)5.256e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)5.256e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.287e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.135e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.91e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.535e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.078e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.078e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.078e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.078e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.009e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.571e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.571e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.039e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.039e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.129e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.129e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.319e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.319e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.394e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)7.437e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.512e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.047e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.716e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)5.529e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.416e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.642e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.06e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.06e-12
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)5.543e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)6.304e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)9.932e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.215e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.537e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.569e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.569e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)9.846e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)5.361e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)5.138e-11
Glyma.19G201800 hypothetical protein NA 1Chr19:45885155–45889932 (-)1.337e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.177e-11