Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P01944

Metabolite ID
P01944
Deionized mass
244.0707 Da
Average m/z
245.0765
Average RT
4.6373
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
60
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

60 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 6Chr16:36856833–36863994 (-)3.771e-13
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)5.318e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.627e-11
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)2.918e-11
Glyma.09G058900 hypothetical protein NA 2Chr09:5397968–5404650 (-)1.732e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.33e-13
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)1.635e-13
Glyma.10G272800 hypothetical protein AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS 2Chr10:49530856–49539222 (+)3.029e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.834e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.834e-13
Glyma.18G240600 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 2Chr18:52922157–52933250 (-)5.675e-11
Glyma.01G030500 hypothetical protein NA 1Chr01:3189212–3200277 (+)8.779e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.965e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.027e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)5.988e-11
Glyma.04G064500 hypothetical protein NA 1Chr04:5367346–5372857 (+)7.513e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.792e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.176e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.103e-17
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)1.078e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)1.078e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)3.437e-14
Glyma.09G019400 hypothetical protein AT1G55270:AT1G55270:Galactose oxidase/kelch repeat superfamily protein 1Chr09:1518046–1520807 (+)1.616e-11
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)1.002e-14
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)2.42e-11
Glyma.09G068500 PHD6 PHD finger protein GmPHD6 AT5G20510:AL5:alfin-like 5 1Chr09:6937814–6941687 (+)5.62e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.835e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.469e-11
Glyma.09G168700 hypothetical protein AT3G17690:CNGC19:cyclic nucleotide gated channel 19 1Chr09:39338715–39352099 (-)4.106e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.072e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.072e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.072e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.072e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.487e-12
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)3.836e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.627e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)5.187e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.834e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.834e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.619e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.083e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)6.258e-14
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)8.356e-17
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.904e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.275e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.904e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.904e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)7.295e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)7.295e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)4.139e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.766e-14
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)1.019e-13
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)3.763e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.004e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.004e-11
Glyma.17G041000 hypothetical protein AT3G06950:AT3G06950:Pseudouridine synthase family protein 1Chr17:3025531–3029224 (+)4.92e-11
Glyma.17G041200 hypothetical protein NA 1Chr17:3041792–3047638 (+)4.92e-11
Glyma.17G041300 hypothetical protein NA 1Chr17:3066546–3073337 (+)4.92e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)9.039e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)8.148e-12