Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P01872

Metabolite ID
P01872
Deionized mass
173.1028 Da
Average m/z
174.1109
Average RT
4.4591
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 2Chr08:8768854–8772973 (-)1.769e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.112e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)6.798e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)2.899e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)4.644e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.871e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.871e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.338e-16
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)7.278e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.17e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.342e-12
Glyma.06G147600 BRI1A brassinosteroid receptor AT4G39400:BRI1:Leucine-rich receptor-like protein kinase family protein 1Chr06:12052122–12056526 (-)7.334e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)7.289e-12
Glyma.08G109400 CHS1 AT5G13930:TT4:Chalcone and stilbene synthase family protein 1Chr08:8391364–8394840 (+)4.958e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)7.289e-12
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)2.844e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)6.599e-12
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)5.251e-12
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)2.053e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.463e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.463e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.97e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.112e-12
Glyma.14G179900 hypothetical protein NA 1Chr14:44227886–44232217 (-)3.237e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.22e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.967e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.22e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.22e-13
Glyma.16G143700 hypothetical protein AT3G50830:COR413-PM2:cold-regulated 413-plasma membrane 2 1Chr16:30388030–30390647 (-)7.31e-13
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)4.094e-13
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)4.669e-13
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)4.283e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)4.669e-13
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)2.899e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)3.233e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)5.217e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.576e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.576e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)6.678e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)4.644e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)6.197e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)2.394e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)8.51e-13
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)9.533e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)6.717e-11