Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P01789

Metabolite ID
P01789
Deionized mass
412.0555 Da
Average m/z
413.0653
Average RT
4.3381
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
46
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

46 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.467e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.335e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)5.604e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.274e-13
Glyma.03G002100 hypothetical protein AT5G01930:MAN6:Glycosyl hydrolase superfamily protein 1Chr03:211934–216522 (+)9.365e-11
Glyma.03G002400 hypothetical protein AT5G25780:EIF3B-2:eukaryotic translation initiation factor 3B-2 1Chr03:234217–238375 (-)9.365e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)8.091e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.201e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)4.858e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)7.664e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.697e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.697e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.697e-12
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)4.294e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.467e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.467e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)5.36e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)4.791e-12
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)4.088e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.61e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.61e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.61e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)2.417e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.855e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.855e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)6.686e-16
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.248e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.521e-15
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)5.387e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.335e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.324e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.324e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)1.453e-12
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)1.453e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.113e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.019e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.113e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.113e-15
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.55e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.064e-15
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)6.883e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.011e-12
Glyma.17G008200 hypothetical protein NA 1Chr17:685577–688365 (+)2.46e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.496e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.496e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.021e-12