Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P01683

Metabolite ID
P01683
Deionized mass
466.0571 Da
Average m/z
467.0599
Average RT
4.2266
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
71
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

71 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G090600 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 8Chr18:8991445–9001857 (-)7.625e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)6.229e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.833e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)2.492e-13
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)3.216e-15
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)7.334e-13
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 2Chr07:6270176–6283087 (-)5.767e-13
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 2Chr07:9523110–9526319 (+)1.292e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)3.408e-13
Glyma.18G090100 hypothetical protein NA 2Chr18:8939839–8941585 (+)7.625e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)2.338e-14
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)2.437e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.833e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)8.949e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)2.646e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)6.337e-13
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.374e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.434e-12
Glyma.03G022500 hypothetical protein NA 1Chr03:2339702–2345448 (+)2.415e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.771e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.361e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.556e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.167e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.167e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.167e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.944e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.112e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)4.763e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)4.763e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)4.763e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.613e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.613e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.613e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.245e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.245e-12
Glyma.06G126400 hypothetical protein AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein 1Chr06:10356650–10362151 (-)2.085e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.051e-16
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.336e-12
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)8.487e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 1Chr07:6169729–6172231 (+)4.113e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)3.028e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)3.028e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)2.107e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)2.107e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)3.028e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)1.537e-11
Glyma.07G073100 hypothetical protein NA 1Chr07:6656839–6661250 (-)4.643e-11
Glyma.07G089800 hypothetical protein NA 1Chr07:8416943–8421355 (+)3.483e-13
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)4.687e-15
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)6.774e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.299e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.039e-13
Glyma.13G293600 hypothetical protein NA 1Chr13:39321355–39324767 (+)1.8e-11
Glyma.13G293800 hypothetical protein NA 1Chr13:39343173–39346777 (+)5.132e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.657e-13
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)6.001e-14
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.216e-16
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.76e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.938e-13
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)6.236e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.635e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.56e-14
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.411e-12
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)8.387e-11
Glyma.18G089800 hypothetical protein AT5G55250:IAMT1:IAA carboxylmethyltransferase 1 1Chr18:8921173–8925579 (+)7.625e-11
Glyma.18G090300 hypothetical protein AT5G55210:AT5G55210:uncharacterized protein 1Chr18:8954961–8957926 (+)7.625e-11
Glyma.18G090500 hypothetical protein AT4G26810:AT4G26810:SWIB/MDM2 domain superfamily protein 1Chr18:8979176–8986302 (-)7.625e-11
Glyma.18G090700 hypothetical protein NA 1Chr18:9016075–9018183 (+)9.693e-11
Glyma.18G090800 hypothetical protein AT3G20300:AT3G20300:extracellular ligand-gated ion channel protein (DUF3537) 1Chr18:9018768–9024832 (-)7.625e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)1.31e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.338e-14