Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P01619

Metabolite ID
P01619
Deionized mass
176.0481 Da
Average m/z
177.0558
Average RT
4.1624
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 4Chr08:9494946–9505931 (-)3.196e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)7.331e-18
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.139e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)1.139e-11
Glyma.08G122500 hypothetical protein NA 2Chr08:9441329–9445315 (-)1.845e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 2Chr08:9452604–9458932 (+)9.508e-12
Glyma.13G184500 hypothetical protein NA 2Chr13:29829471–29834027 (+)4.754e-12
Glyma.16G172500 hypothetical protein AT3G59140:ABCC10:multidrug resistance-associated protein 14 2Chr16:33322352–33330062 (+)1.675e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)3.879e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.434e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.434e-13
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)1.018e-12
Glyma.03G073300 hypothetical protein AT1G79210:AT1G79210:N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 1Chr03:17770362–17785644 (+)1.975e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.937e-12
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)1.38e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)3.006e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)4.633e-11
Glyma.05G147900 hypothetical protein AT1G27340:LCR:Galactose oxidase/kelch repeat superfamily protein 1Chr05:34213379–34217429 (+)5.865e-12
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)5.53e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)9.384e-13
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)9.384e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.351e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.015e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)7.817e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.554e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)1.926e-11
Glyma.08G123400 hypothetical protein NA 1Chr08:9486565–9490448 (-)9.508e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)5.688e-14
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)5.094e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)5.094e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.699e-11
Glyma.08G215500 hypothetical protein AT2G22750:AT2G22750:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:17476921–17480079 (+)2.582e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.019e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)2.794e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)4.109e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.526e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)5.634e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.072e-11
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)1.861e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.227e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.227e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.227e-12
Glyma.13G319700 hypothetical protein NA 1Chr13:41414504–41418957 (+)4.191e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.511e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)9.678e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.268e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.882e-11
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)4.887e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)4.761e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)4.714e-16
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)2.391e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)9.385e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)9.385e-13
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)3.668e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.248e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.009e-13