Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00976

Metabolite ID
P00976
Deionized mass
291.1301 Da
Average m/z
292.1364
Average RT
3.7165
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
65
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

65 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)4.113e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.919e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.497e-15
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.166e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)1.041e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)7.47e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.696e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.777e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.581e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.621e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.621e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.621e-12
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)5.843e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.248e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.24e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)1.674e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)2.263e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)2.263e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)2.263e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)2.263e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.025e-12
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)6.038e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.156e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.156e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.156e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.973e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.973e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)1.021e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)1.021e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)7.89e-13
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)1.116e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)1.116e-11
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)2.778e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.136e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.136e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.136e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.136e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.498e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.362e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.362e-13
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)4.658e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.547e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.547e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.308e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.779e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.497e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)3.292e-13
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.921e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)4.77e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)4.77e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)4.77e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.7e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)2.712e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.494e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.494e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.809e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.367e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.809e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.809e-11
Glyma.16G117000 hypothetical protein NA 1Chr16:26140411–26140830 (+)6.893e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)9.904e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.437e-11
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)2.977e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)6.994e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)9.094e-11