Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00759

Metabolite ID
P00759
Deionized mass
241.0963 Da
Average m/z
242.1022
Average RT
3.6861
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
80
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

80 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)3.372e-14
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)5.383e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.536e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.068e-13
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.068e-13
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.068e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)7.099e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)7.099e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.965e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.708e-12
Glyma.20G013100 hypothetical protein NA 2Chr20:1134080–1135710 (-)5.654e-13
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)7.948e-13
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)3.372e-14
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)5.581e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.223e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.491e-12
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)5.57e-11
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)8.072e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.919e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.092e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.567e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)1.703e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)4.591e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)4.591e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.536e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.536e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.536e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.536e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)4.371e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)4.371e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)4.125e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.861e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)6.731e-13
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.424e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)4.222e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.671e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.068e-13
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.068e-13
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.068e-13
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)6.572e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.068e-13
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.068e-13
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)2.265e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.738e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.65e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.65e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.099e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.342e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.965e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)5.837e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)8.021e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.243e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.573e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.243e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.243e-12
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)2.24e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)2.24e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)1.165e-11
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)2.524e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.383e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.383e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.383e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.383e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.518e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.562e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.004e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.493e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)7.783e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)9.682e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.984e-14
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)6.476e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)7.681e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.182e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.182e-15
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)6.384e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.435e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.026e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.365e-16
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)9.352e-13
Glyma.20G099900 hypothetical protein AT5G23390:AT5G23390:polygalacturonase inhibitor (DUF639) 1Chr20:34312783–34318966 (+)7.024e-13