Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00725

Metabolite ID
P00725
Deionized mass
217.1244 Da
Average m/z
218.1322
Average RT
3.6801
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
68
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

68 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G226300 hypothetical protein NA 10Chr18:51471540–51498344 (+)1.862e-13
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.06e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)2.21e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)2.133e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.107e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.774e-12
Glyma.01G039700 hypothetical protein AT1G10385:AT1G10385:Vps51/Vps67 family (components of vesicular transport) protein 1Chr01:4304713–4310259 (-)1.552e-14
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.954e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)5.408e-11
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)2.419e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.654e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)6.439e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.299e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.753e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.179e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)4.574e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.894e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)7.699e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)1.896e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)1.125e-11
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)2.084e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)7.285e-12
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)2.133e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.107e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.107e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.107e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.107e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.68e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.88e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)3.349e-12
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)7.168e-15
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)1.82e-13
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)1.82e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.038e-12
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)6.977e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.398e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)6.52e-14
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)2.044e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)8.316e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.828e-14
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.076e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.4e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.97e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.4e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.4e-13
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)5.973e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)5.58e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)4.739e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.098e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)6.664e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)2.084e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)8.086e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.754e-14
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.823e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.823e-11
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)5.471e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.353e-14
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.011e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)5.511e-12
Glyma.17G144400 hypothetical protein NA 1Chr17:11801158–11803913 (+)4.449e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)2.21e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)4.425e-11
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)1.017e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.026e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.026e-13
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)6.256e-12
Glyma.20G099900 hypothetical protein AT5G23390:AT5G23390:polygalacturonase inhibitor (DUF639) 1Chr20:34312783–34318966 (+)6.51e-11
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 1Chr20:35498179–35500565 (-)8.439e-11