Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00511

Metabolite ID
P00511
Deionized mass
307.0092 Da
Average m/z
308.0168
Average RT
3.4351
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
101
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

101 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.825e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.38e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)2.41e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.142e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)6.936e-18
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)9.085e-15
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.603e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.603e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.964e-12
Glyma.14G176900 SGF14K 14-3-3 protein SGF14k AT1G78300:GRF2:ral regulatory factor 2 2Chr14:43637893–43642553 (+)3.218e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.283e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)4.829e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)5.613e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.476e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)6.931e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.722e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.722e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.089e-12
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)1.439e-13
Glyma.02G294900 hypothetical protein AT5G55220:AT5G55220:trigger factor type chaperone family protein 1Chr02:47300149–47306133 (+)8.272e-11
Glyma.02G295000 hypothetical protein AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein 1Chr02:47306160–47312036 (-)8.272e-11
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)2.096e-12
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)2.096e-12
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)1.296e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.808e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.994e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.002e-16
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)2.421e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.102e-14
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)6.306e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)4.654e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.622e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.108e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.42e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.056e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.056e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.338e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.802e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.802e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.802e-13
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)1.676e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)3.739e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.954e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.348e-15
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)4.504e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.825e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.825e-12
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)8.98e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)8.98e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)3.96e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)3.984e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)7.994e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.142e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.142e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.142e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.142e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.514e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.999e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.738e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)3.604e-12
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)6.159e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.431e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.128e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.128e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.128e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.128e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)3.805e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.246e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.246e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.652e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.652e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.936e-18
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.904e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.904e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.603e-15
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.699e-13
Glyma.14G177100 hypothetical protein AT1G22450:COX6B:cytochrome C oxidase 6B 1Chr14:43661177–43665659 (+)3.749e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.283e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)2.561e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.9e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.246e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.9e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.9e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.399e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.533e-14
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)4.203e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)4.203e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.938e-12
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)1.749e-13
Glyma.16G205700 hypothetical protein AT1G33360:AT1G33360:ATP-dependent Clp protease 1Chr16:36636652–36645502 (-)6.158e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.38e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)8.848e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.848e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.203e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.203e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.057e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)5.2e-11
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)1.732e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.007e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)7.006e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.039e-11