Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00450

Metabolite ID
P00450
Deionized mass
496.1378 Da
Average m/z
497.1454
Average RT
3.3307
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.793e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)9.87e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.313e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)8.821e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.109e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.109e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)3.255e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)2.67e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.794e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.395e-13
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)8.54e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.445e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.05e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.05e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.05e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.296e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.296e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)3.036e-12
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)5.631e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)5.631e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)7.832e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.273e-12
Glyma.09G056300 hypothetical protein NA 1Chr09:5059486–5068979 (+)4.544e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)3.128e-13
Glyma.11G094700 hypothetical protein AT5G08280:HEMC:hydroxymethylbilane synthase 1Chr11:7190632–7195838 (-)8.923e-11
Glyma.11G095000 hypothetical protein NA 1Chr11:7206492–7209711 (-)8.681e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)6.787e-15
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.847e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.461e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.461e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)8.821e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.109e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.109e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.045e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)4.669e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.012e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.282e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.012e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.012e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.144e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.283e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)9.87e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)9.87e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)9.87e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)9.87e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.544e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.061e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.192e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.363e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.539e-13
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.112e-18
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)5.83e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)5.83e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.507e-11
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)2.586e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.469e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.469e-14
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.726e-12