Overview Annotation GWAS Evidence Associated genes

P00404

Metabolite ID
P00404
Deionized mass
177.0617 Da
Average m/z
178.0693
Average RT
3.2649
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
5
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

5 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)1.172e-11
Glyma.03G135600 hypothetical protein NA 1Chr03:35109981–35110632 (-)9.692e-11
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)3.28e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.088e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)5.501e-11