Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00389

Metabolite ID
P00389
Deionized mass
288.0501 Da
Average m/z
289.0548
Average RT
3.2526
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
46
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

46 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)4.691e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)8.55e-12
Glyma.09G053800 hypothetical protein NA 2Chr09:4737413–4755632 (-)1.035e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.629e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.629e-13
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)1.841e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)4.069e-11
Glyma.03G022200 hypothetical protein NA 1Chr03:2326204–2327764 (+)2.473e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.118e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)3.459e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)4.528e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)4.528e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)4.528e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.933e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.933e-11
Glyma.06G126400 hypothetical protein AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein 1Chr06:10356650–10362151 (-)4.741e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.998e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)4.574e-12
Glyma.06G258900 hypothetical protein NA 1Chr06:44382191–44386628 (+)8.685e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.453e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.325e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)1.25e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)1.25e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)5.927e-11
Glyma.11G094700 hypothetical protein AT5G08280:HEMC:hydroxymethylbilane synthase 1Chr11:7190632–7195838 (-)2.396e-13
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.688e-14
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.524e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.524e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.629e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.491e-13
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)4.521e-13
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)7.854e-15
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)7.854e-15
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)4.691e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)4.691e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)4.691e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)4.691e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.09e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.883e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.553e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)5.409e-12
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)7.202e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.38e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.38e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)9.361e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.07e-13