Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00353

Metabolite ID
P00353
Deionized mass
129.0425 Da
Average m/z
130.0488
Average RT
3.2314
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
24
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

24 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.111e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)3.337e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 2Chr07:6169729–6172231 (+)6.065e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.111e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.055e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.663e-11
Glyma.05G241100 Rsdv1-like AT3G20000:TOM40:translocase of the outer mitochondrial membrane 40__AT1G50400:AT1G50400:Eukaryotic porin family protein 1Chr05:41608543–41614319 (-)3.818e-12
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)6.539e-13
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)2.309e-11
Glyma.08G182400 hypothetical protein NA 1Chr08:14625596–14626713 (+)5.207e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.244e-11
Glyma.11G109400 hypothetical protein AT4G28510:PHB1:prohibitin 1 1Chr11:8340396–8344235 (-)8.846e-11
Glyma.11G109500 hypothetical protein NA 1Chr11:8345676–8351718 (+)8.845e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)2.342e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.087e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)6.462e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)2.735e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)3.337e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.288e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.288e-12
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)7.199e-11
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)7.199e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)3.531e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)5e-11