Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00240

Metabolite ID
P00240
Deionized mass
336.0804 Da
Average m/z
337.0872
Average RT
3.1467
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
128
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

128 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)3.09e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.865e-12
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 3Chr07:9523110–9526319 (+)4.807e-13
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)7.602e-13
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)7.313e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)1.002e-15
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)5.755e-16
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.164e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.164e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.164e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.59e-12
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)2.565e-13
Glyma.20G013100 hypothetical protein NA 2Chr20:1134080–1135710 (-)7.326e-14
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)5.766e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)2.071e-12
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)3.09e-13
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)3.025e-12
Glyma.01G047100 hypothetical protein AT1G14250:AT1G14250:GDA1/CD39 nucleoside phosphatase family protein__AT1G14230:AT1G14230:GDA1/CD39 nucleoside phosphata… 1Chr01:5503526–5511806 (+)6.374e-11
Glyma.01G231400 hypothetical protein AT4G25340:FKBP53:FK506 BINDING PROTEIN 53 1Chr01:55836387–55840615 (+)3.842e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)2.045e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)7.355e-14
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)5.447e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)3.82e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)3.552e-14
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.557e-15
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.654e-16
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)7.398e-12
Glyma.03G022500 hypothetical protein NA 1Chr03:2339702–2345448 (+)1.87e-11
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)2.281e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)3.82e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)3.223e-13
Glyma.04G234900 hypothetical protein AT5G53000:TAP46:2A phosphatase associated protein of 46 kD 1Chr04:50332008–50336222 (-)9.783e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.164e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.865e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.865e-12
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)1.983e-15
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.609e-14
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)4.298e-15
Glyma.07G097000 hypothetical protein AT1G19670:CLH1:chlorophyllase 1 1Chr07:9118318–9120182 (-)5.436e-11
Glyma.07G107900 hypothetical protein AT1G61670:AT1G61670:Lung seven transmembrane receptor family protein 1Chr07:10602117–10606079 (+)2.351e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)5.18e-11
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)2.232e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)3.191e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)3.191e-11
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)1.286e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)4.842e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.258e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.557e-12
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)4.779e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)1.618e-12
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)4.591e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)9.091e-12
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)2.429e-12
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)9.863e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)3.251e-13
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.775e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)4.214e-14
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.164e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.164e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.164e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.164e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.164e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.996e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.268e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)1.661e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)2.783e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.609e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.869e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.867e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.273e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.272e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.729e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.729e-13
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.667e-14
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)7.142e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.249e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)9.89e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.808e-16
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.346e-16
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.808e-16
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.808e-16
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.025e-19
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.867e-19
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)2.976e-11
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 1Chr15:48661607–48665946 (-)7.027e-12
Glyma.15G257500 hypothetical protein NA 1Chr15:48713244–48717192 (+)9.733e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)9.4e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)4.368e-12
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)3.728e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)1.997e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)4.298e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.258e-12
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)1.68e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.007e-14
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)2.697e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)6.494e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.032e-12
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)8.034e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.032e-12
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)1.163e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.455e-13
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)9.849e-12
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)9.849e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.01e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)2.164e-14
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)5.786e-14
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.764e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)6.445e-11
Glyma.17G137100 hypothetical protein AT4G22860:AT4G22860:Cell cycle regulated microtubule associated protein 1Chr17:11065492–11072635 (+)6.556e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.377e-11
Glyma.18G227400 hypothetical protein AT2G45720:AT2G45720:ARM repeat superfamily protein 1Chr18:51650951–51654636 (-)3.617e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)3.919e-11
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)1.027e-13
Glyma.18G237300 hypothetical protein AT4G01320:ATSTE24:Peptidase family M48 family protein 1Chr18:52606766–52614841 (-)2.067e-11
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)2.998e-13
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)3.964e-12
Glyma.18G262800 hypothetical protein NA 1Chr18:54832649–54833890 (+)8.4e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)8.516e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.763e-13
Glyma.18G268000 hypothetical protein NA 1Chr18:55205656–55213313 (-)6.976e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)7.639e-12
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)7.428e-12
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)1.028e-12
Glyma.19G194300 Dt1 AT5G03840:TFL1:PEBP (phosphatidylethanolamine-binding protein) family protein 1Chr19:45183357–45185175 (-)3.209e-12
Glyma.19G194500 hypothetical protein AT2G36270:ABI5:Basic-leucine zipper (bZIP) transcription factor family protein 1Chr19:45201612–45206816 (+)3.209e-12
Glyma.19G194800 hypothetical protein AT2G36250:FTSZ2-1:Tubulin/FtsZ family protein 1Chr19:45215929–45223182 (+)3.209e-12
Glyma.19G195600 hypothetical protein AT3G52570:AT3G52570:alpha/beta-Hydrolases superfamily protein 1Chr19:45273343–45277374 (-)3.287e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.028e-13