Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00101

Metabolite ID
P00101
Deionized mass
425.1500 Da
Average m/z
426.1563
Average RT
3.0535
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
64
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

64 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)9.884e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 2Chr05:32021521–32025767 (-)2.896e-14
Glyma.08G147300 hypothetical protein NA 2Chr08:11238871–11242682 (+)2.894e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)2.138e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)4.889e-11
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)7.78e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)7.78e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)7.78e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)7.78e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)7.78e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)7.78e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)7.78e-11
Glyma.01G170000 hypothetical protein AT4G36380:ROT3:Cytochrome P450 superfamily protein 1Chr01:50743009–50750309 (+)3.339e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)5.642e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.079e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)8.115e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.19e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.284e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.751e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)7.502e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.683e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.159e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.159e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.159e-15
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.926e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.635e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.612e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.612e-11
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)2.819e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.471e-16
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)2.606e-11
Glyma.08G147500 hypothetical protein AT3G18680:AT3G18680:Amino acid kinase family protein 1Chr08:11253074–11256505 (+)2.18e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)3.94e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)3.94e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)5.133e-12
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)5.133e-12
Glyma.09G056300 hypothetical protein NA 1Chr09:5059486–5068979 (+)2.38e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)1.631e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.304e-15
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.835e-14
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)4.828e-11
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)1.178e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.924e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.049e-12
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)4.569e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)3.244e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.61e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)7.61e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)7.61e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)4.378e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)9.006e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)5.133e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)5.133e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)5.133e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.981e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)9.247e-11
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)1.419e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)6.232e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)6.232e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)8.857e-11
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)4.831e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)8.005e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.309e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.309e-11