Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00088

Metabolite ID
P00088
Deionized mass
320.2263 Da
Average m/z
321.2349
Average RT
3.0529
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)4.139e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)6.654e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)8.781e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.169e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.169e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)3.399e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.099e-11
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)7.962e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.483e-17
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)9.374e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.763e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.477e-11
Glyma.06G145200 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr06:11831210–11841320 (+)4.939e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)2.198e-12
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)2.198e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)5.286e-13
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)1.079e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)5.634e-12
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)9.854e-12
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)3.34e-12
Glyma.08G116400 hypothetical protein NA 1Chr08:8947598–8949573 (-)5.862e-12
Glyma.08G116700 hypothetical protein NA 1Chr08:8997512–9003565 (+)2.7e-11
Glyma.08G116800 hypothetical protein AT1G29240:AT1G29240:transcription initiation factor TFIID subunit, putative (DUF688) 1Chr08:9006479–9010442 (-)6.319e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)3.467e-17
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)6.728e-15
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.206e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.626e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.971e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)8.509e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.769e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.769e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.368e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)4.838e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)9.31e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.105e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.773e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.224e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.773e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.773e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.27e-12
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)9.304e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.736e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)5.672e-11
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)5.869e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)5.691e-13
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)6.091e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.641e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.33e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.33e-12
Glyma.17G137100 hypothetical protein AT4G22860:AT4G22860:Cell cycle regulated microtubule associated protein 1Chr17:11065492–11072635 (+)6.134e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)4.663e-13
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.085e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.965e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.965e-15
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.612e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)7.955e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.044e-12