Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00048

Metabolite ID
P00048
Deionized mass
248.1733 Da
Average m/z
249.1792
Average RT
3.0508
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.511e-11
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)3.402e-14
Glyma.01G045600 hypothetical protein NA 1Chr01:5242432–5245038 (-)9.559e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)5.746e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)9.353e-12
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)1.411e-13
Glyma.02G290800 hypothetical protein AT5G07470:PMSR3:peptidemethionine sulfoxide reductase 3 1Chr02:47032515–47036279 (-)8.322e-12
Glyma.02G291200 hypothetical protein NA 1Chr02:47062620–47065072 (-)8.322e-12
Glyma.02G292200 hypothetical protein AT3G20475:MSH5:MUTS-homologue 5 1Chr02:47125531–47139234 (-)6.413e-13
Glyma.02G292500 hypothetical protein AT5G55070:AT5G55070:Dihydrolipoamide succinyltransferase 1Chr02:47153091–47160573 (+)6.413e-13
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)7.504e-13
Glyma.02G294000 hypothetical protein NA 1Chr02:47237993–47240495 (+)3.215e-12
Glyma.02G294200 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 1Chr02:47256480–47263517 (+)1.029e-14
Glyma.02G294500 hypothetical protein AT5G50850:MAB1:Transketolase family protein 1Chr02:47272683–47277831 (-)1.872e-13
Glyma.02G294900 hypothetical protein AT5G55220:AT5G55220:trigger factor type chaperone family protein 1Chr02:47300149–47306133 (+)3.766e-15
Glyma.02G295000 hypothetical protein AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein 1Chr02:47306160–47312036 (-)3.766e-15
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)2.441e-14
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)2.441e-14
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)1.396e-12
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)2.152e-11
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)2.152e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)7.243e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.47e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.916e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.916e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.96e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.96e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.96e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.758e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.97e-15
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.511e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.511e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)3.774e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)3.773e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.402e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.402e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.402e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.402e-14
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.353e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.101e-12
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)4.022e-11
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)4.291e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.029e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.657e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)2.276e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.669e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.514e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.637e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.55e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.55e-12
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)9.225e-12
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)9.86e-11
Glyma.19G122900 hypothetical protein AT3G56860:UBA2A:UBP1-associated protein 2A 1Chr19:38107100–38113754 (-)8.539e-11
Glyma.20G084500 hypothetical protein AT2G33340:MAC3B:MOS4-associated complex 3B__AT1G04510:MAC3A:MOS4-associated complex 3A 1Chr20:31666190–31674959 (-)7.957e-12
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)1.111e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.838e-13
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)9.786e-11
Glyma.20G179000 hypothetical protein NA 1Chr20:41630613–41632249 (-)5.115e-11