Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P08554 Jasminoside A 330.1644 331.1724 127
P10082 Trifuhalol B 390.0587 391.0660 127
P10739 Antibiotic D 788-7 515.1878 516.1962 127
P10870 Isorhamnetin 3-sophoroside-7-glucoside 802.2147 803.2205 127
P12319 Didemethylcitalopram 296.1334 297.1412 127
P13946 Ethyl (E)-3-diethoxyphosphinothioyloxybut-2-enoate 282.0724 283.0815 127
P14285 Triethylene glycol dimethacrylate 286.1392 287.1451 127
P19144 4-Fluoro-1-[2-[(4-methyl-1-methylsulfonylpiperidin-4-yl)amino]acetyl]pyrrolidine-2-carbonitrile 346.1459 347.1558 127
P20602 Isorhamnetin 3-gentiotrioside-7-glucoside 964.2883 965.2932 127
P21706 dTDP-4-hydroxyamino-4,6-dideoxy-alpha-D-glucose 563.1008 564.1089 127

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 7,578
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 6,363
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 6,345
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 4,562
Glyma.14G093100 hypothetical protein NA 4,504
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 4,469
Glyma.19G012300 hypothetical protein NA 4,469
Glyma.09G082000 hypothetical protein NA 4,386
Glyma.13G135700 hypothetical protein NA 4,376
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 4,376