Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P08612 Scrophuloside A7 752.2562 753.2657 161
P13827 (3-Nitrobenzoyl)alanine 238.0564 239.0640 161
P16053 Luteolin 7-galacturonide-4'-glucoside 624.1286 625.1388 161
P21570 (6E)-8-Oxogeraniol 168.1140 169.1209 161
P26728 1-nonen-3-one 140.1196 141.1267 161
P30204 Theasaponin C1 1174.5741 1175.5812 161
P36301 Dactylamide A 448.2163 449.2208 161
P46130 AMD 070 349.2298 350.2359 161
P50455 Carrageenan, potassium salt of 347.2545 348.2597 161
P11076 Amino leucine 146.1063 147.1143 160

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.16G032000 hypothetical protein AT4G01270:AT4G01270:RING/U-box superfamily protein 92
Glyma.16G145300 hypothetical protein AT2G35780:scpl26:serine carboxypeptidase-like 26__AT3G07990:SCPL27:serine carboxypeptidase-like 27 92
Glyma.16G194000 hypothetical protein AT3G48900:AT3G48900:single-stranded DNA endonuclease family protein 92
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen and extensin family protein 92
Glyma.17G215200 hypothetical protein NA 92
Glyma.20G219100 hypothetical protein AT3G02830:ZFN1:zinc finger protein 1 92
Glyma.03G070600 hypothetical protein AT1G74710:EDS16:ADC synthase superfamily protein 91
Glyma.12G059300 hypothetical protein NA 91
Glyma.15G262100 hypothetical protein AT1G79550:PGK:phosphoglycerate kinase 91
Glyma.16G194100 hypothetical protein NA 91