Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P28501		433.2605	434.2679	177
P28558		400.6988	401.7068	177
P29734	Stemphyloxin I	382.2333	383.2392	177
P30823		181.0450	182.0523	177
P38200	4-(2-Chlorophenoxy)-N-[3-(methylcarbamoyl)phenyl]piperidine-1-carboxamide	387.1344	388.1406	177
P39722	Pellynol H	510.3657	511.3732	177
P43007		407.3600	408.3681	177
P43793	Acetyl-alpha-methylfentanyl	336.2200	337.2268	177
P45177	Fargoside D	778.4081	779.4154	177
P05243	5'-Deoxy-5'-fluoroadenosine	269.0921	270.0999	176

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.12G003500	hypothetical protein	AT5G61670:AT5G61670:orange protein	94
Glyma.08G136700	hypothetical protein	NA	93
Glyma.14G209100	hypothetical protein	NA	93
Glyma.14G209800	hypothetical protein	AT5G17240:SDG40:SET domain group 40	93
Glyma.14G209900	hypothetical protein	NA	93
Glyma.15G108100	hypothetical protein	NA	93
Glyma.03G037300	hypothetical protein	NA	92
Glyma.09G065900	hypothetical protein	NA	92
Glyma.09G066000	hypothetical protein	NA	92
Glyma.09G066200	hypothetical protein	AT5G57030:LUT2:Lycopene beta/epsilon cyclase protein	92