Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P31215		966.3363	967.3449	180
P37602	(6R)-9,10-Dihydroxy-4,7-megastigmadien-3-one-9-O-beta-D-glucopyranoside	386.1922	387.2002	180
P41095		423.3575	424.3622	180
P49211	Bamifylline	385.2106	386.2173	180
P06876	Lembyne A	342.0021	343.0076	179
P14986	N-(2-hydroxyhexadecanoyl)-sphinganine	555.5217	556.5296	179
P21946		999.3356	1000.3371	179
P23960	Upunaphenol N	934.2723	935.2842	179
P29027	Bazzanin J	492.0855	493.0949	179
P35945		475.1093	476.1172	179

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.12G003500	hypothetical protein	AT5G61670:AT5G61670:orange protein	94
Glyma.08G136700	hypothetical protein	NA	93
Glyma.14G209100	hypothetical protein	NA	93
Glyma.14G209800	hypothetical protein	AT5G17240:SDG40:SET domain group 40	93
Glyma.14G209900	hypothetical protein	NA	93
Glyma.15G108100	hypothetical protein	NA	93
Glyma.03G037300	hypothetical protein	NA	92
Glyma.09G065900	hypothetical protein	NA	92
Glyma.09G066000	hypothetical protein	NA	92
Glyma.09G066200	hypothetical protein	AT5G57030:LUT2:Lycopene beta/epsilon cyclase protein	92