Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P06071	Proteacin	473.1514	474.1552	216
P23606		981.3248	982.3265	216
P25233	Ligujapone	202.1001	203.1075	216
P34921	Xyloccensin O	700.2387	701.2457	216
P52079	(3S)-3-Hydroxy-N6,N6,N6-trimethyl-L-lysine	204.1493	205.1577	216
P08763		831.2168	832.2238	215
P36727	Cyclopentenyl propionate musk	264.2057	265.2136	215
P40346		570.1408	571.1471	215
P48063		203.5863	204.5948	215
P52212	2-Chloro-N-icosa-5,8,11,14-tetraenylacetamide	365.2460	366.2546	215

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.12G003500	hypothetical protein	AT5G61670:AT5G61670:orange protein	94
Glyma.08G136700	hypothetical protein	NA	93
Glyma.14G209100	hypothetical protein	NA	93
Glyma.14G209800	hypothetical protein	AT5G17240:SDG40:SET domain group 40	93
Glyma.14G209900	hypothetical protein	NA	93
Glyma.15G108100	hypothetical protein	NA	93
Glyma.03G037300	hypothetical protein	NA	92
Glyma.09G065900	hypothetical protein	NA	92
Glyma.09G066000	hypothetical protein	NA	92
Glyma.09G066200	hypothetical protein	AT5G57030:LUT2:Lycopene beta/epsilon cyclase protein	92